Lodderomyces elongisporus: PVL30_000985
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Entry
PVL30_000985 CDS
T01116
Symbol
YTH1
Name
(RefSeq) RNA-binding component of cleavage and polyadenylation factor
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
lel
Lodderomyces elongisporus
Pathway
lel03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PVL30_000985 (YTH1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lel03021
]
PVL30_000985 (YTH1)
03019 Messenger RNA biogenesis [BR:
lel03019
]
PVL30_000985 (YTH1)
Transcription machinery [BR:
lel03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PVL30_000985 (YTH1)
Messenger RNA biogenesis [BR:
lel03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
PVL30_000985 (YTH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_2
zf-CCCH_4
zf-CCCH_DUS3L
zf-CCCH_3
zf-CCCH_12
zf-CCCH_RBM22
Motif
Other DBs
NCBI-GeneID:
5235860
NCBI-ProteinID:
XP_001528499
UniProt:
A5DUI3
LinkDB
All DBs
Position
1:2751060..2751695
Genome browser
AA seq
211 aa
AA seq
DB search
MLHSNSIIHPNNTNHRFKFEPFLRNEYNFGLDPDRPVCPFFNHQFPTTSCPNGTNCPNKH
PSQTFKNKLVCKHWLRGLCKKGDNCEFLHEYNLRKMPECVFYSKNGYCTQTPECLYLHID
PQSKIPECMNYNAGFCLEGPNCKNRHVRRIVCPNFLAGFCPEGPECEFTHPKFNHQNLYL
RIKPDPTEINEKTVSVAGKSPAEEESLQEEK
NT seq
636 nt
NT seq
+upstream
nt +downstream
nt
atgctacattcaaattcaataattcatccaaacaataccaaccataggttcaagtttgaa
ccatttttacgaaatgaatacaactttgggctagatccagatagacctgtttgccccttt
ttcaaccatcaatttcctaccacttcatgtccgaatggtaccaactgtccgaacaaacat
ccttcgcaaacatttaaaaataaactagtgtgcaaacattggttacgtggcttgtgcaaa
aaaggagacaattgcgaattcttacatgaatacaatctacgaaagatgcctgaatgtgtg
ttttattccaagaatgggtactgtactcaaacccccgagtgtttatacttgcacattgat
ccacaatcaaagatacccgaatgcatgaattataatgctgggttttgtctagaaggtccc
aactgtaaaaaccgacacgtaagacgcatagtttgtccaaatttccttgctggattttgt
cccgaaggaccagaatgtgaatttacacatccgaaatttaatcatcaaaacttatatttg
aggatcaagccggatccaaccgagattaacgaaaagactgtgctggttgcaggtaagtca
ccagcagaagaagaaagtctacaagaagaaaaataa
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