Lodderomyces elongisporus: PVL30_001131
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Entry
PVL30_001131 CDS
T01116
Symbol
NOT3
Name
(RefSeq) CCR4-NOT core subunit
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
lel
Lodderomyces elongisporus
Pathway
lel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVL30_001131 (NOT3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lel03019
]
PVL30_001131 (NOT3)
Messenger RNA biogenesis [BR:
lel03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PVL30_001131 (NOT3)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PVL30_001131 (NOT3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
Motif
Other DBs
NCBI-GeneID:
5235386
NCBI-ProteinID:
XP_001528643
UniProt:
A5DUX7
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Position
1:complement(join(3148442..3150774,3150813..3150816))
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AA seq
778 aa
AA seq
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MEGLSDFNYHYERYESLTSTEDDSDNQREKEKLANDLKREIKKLQKFREQIKHWLSNDAV
NTLGPVGTSYSGKLLENKSTIEDAMEIYKSVEKQTKLKTFSNQSIMMTFIDSANGEEEEE
DSDEFESSEDEDESEYDDLSPEAVESIRFFKDAISQLKEQIEKSTHEFDKLASKKVRKNN
SSTIEAKKEKIQATIANSKFHQKKLRKLIRLLKNGMVIEFNLIFALKGDIEEYLNTNGDY
EFTKDTELYDDIFNQIAAGDEDYSEIHDDQSTQPTSEDSSGTVFDKNGHATKASSTTPTA
NSAATTTTTTTTTTNAQSHGGNSSSHLQHGNTKPLSSHHQQQPNSSSTAAASASANTTTS
SSSQQSVPPQSSPEMASPAIVRTLRPASTPSKPVGGLKWSAAAAVGIPEPAEKAVPESEK
EKSSSVEPESSSNSNNNNNNNNNNNNNNSNNNINNNSNNNNKNSNNNNSNNTSSATTAAN
ASTTSTVVKEESIPYEPLVLEDLDADKYKSIISNSPLSKTELNLFSDMKLVRVPPGIQDL
AISFASKRNNDEFKILVDSNDFNQYTTPIYKPYLPNIVQPKYYSQFTNFSFKHPMQLSKF
QSSWNRVRAFYGFESLVKEIQTLTLQDSPESNSLVSEMTFVLFYGFYYGLTPAENLIAEH
CLFELGWKPYKAQLDASSTKSNSISRSASPDGSLKDSSQSNQYFYWFKRLKLISPGDQQL
QQQQQKQQFPLDTNRTFHTGFEIGDYQVFDLSFWELFVKYGYKFEYSSCQMEPSQKLF
NT seq
2337 nt
NT seq
+upstream
nt +downstream
nt
atggagggactactggacttcaattaccactatgagcggtacgagagtctaacaagtact
gaagatgattcagacaatcaaagggaaaaggagaaactagcgaatgacttaaagagggag
ataaagaaactacaaaagttccgagaacagattaaacattggctactgaatgatgcagtc
aacaccttgggcccagttggaacatcgtatagtgggaaacttttggagaataagagtaca
atagaggatgctatggagatttacaaatcggttgagaagcaaactaagctcaagacattt
tccaaccagtctattatgatgacatttattgatagcgcgaatggcgaagaagaagaggaa
gatagcgatgagtttgaaagtagtgaggatgaggacgaaagtgaatacgatgatctttca
ccagaggcagtggaatcaattagattctttaaggacgctataagtcagctaaaggagcaa
attgaaaagtctactcatgagtttgataagctagcgagcaaaaaagtgagaaaaaataac
tcatcaacgattgaagccaaaaaggaaaagatccaggctacaattgcaaatagcaaattt
catcaaaagaaattgagaaagttgattcgattgttgaagaacggaatggttattgaattt
aatctcatctttgccttgaaaggtgacattgaagagtacttgaacactaatggagactat
gagtttaccaaagatacagagttgtatgacgatatctttaaccaaattgccgcaggggat
gaagattattctgagatccacgacgatcaatccacgcaacctaccctggaggacagcagt
gggactgttttcgacaaaaatggacatgccactaaagctctgtcaacaaccccaacagca
aattcagcagctacaacaacaacaacaacaaccacaacaacaaatgcacagtcacatggc
ggcaattcatccagtcatcttcagcatggtaatacaaaacctttgtcgtctcaccatcaa
caacaaccaaactcctcatccacggccgcagcttccgccagcgccaacactacaacttcg
ctgctgtctcaacaaagcgtaccgcctcaatctagccccgagatggcatcacctgcaatt
gtaagaactttgcgtccagcttcaaccccgtcaaagcctgtgggtggactcaagtggtca
gcagcagccgctgttggtattcctgagccagcagagaaagctgttcccgaatcagaaaaa
gagaagagctcttcggttgaacctgagtccagcagcaatagcaacaataacaataacaat
aacaacaataacaataacaataacagtaacaataatatcaataacaacagcaataataac
aacaagaatagcaacaataacaacagtaataatacatcttccgctactactgctgctaat
gcttccactacatccacggtagttaaagaggaaagcataccgtacgaacctttggttctt
gaagatcttgatgcggacaagtacaagagcataatatccaactcgcctttatctaaaacc
gaattaaatttgttttccgatatgaagctagttcgtgtgcctccgggaatccaagatttg
gccatttcatttgcatcgaagcgaaataatgatgaattcaagatcctagttgactccaac
gatttcaatcagtatactactccaatctacaaaccttacttgcctaatatagttcaacca
aagtattattcacaattcaccaatttcagcttcaagcatccaatgcaattaagcaaattt
caatccagttggaacagggtcagggcgttctacggttttgaaagtctagtgaaggaaata
cagactttgactttgcaagatagccctgagagcaattccttggtctcagaaatgacattt
gtgctattttatggtttttattatggtttaacaccagcagaaaatttgatcgcagaacat
tgcttatttgaactaggctggaagccatacaaagcacagttagatgcatcaagcaccaag
agtaactcaatttccagatcagcctcacccgatggtctgctcaaagatagtctgcaatct
aatcaatatttttattggttcaagaggctaaaactcatctctcccggtgatcaacaattg
caacagcagcaacaaaagcaacaatttcctttggatacaaatagaacttttcacaccgga
tttgaaatcggagattaccaggtttttgatttgagcttttgggaactttttgtcaagtat
gggtataaatttgaatacagttcttgtcaaatggaaccctcgcaaaagcttttctaa
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