Lodderomyces elongisporus: PVL30_001171
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Entry
PVL30_001171 CDS
T01116
Symbol
RFA1
Name
(RefSeq) Replication factor A protein 1
KO
K07466
replication factor A1
Organism
lel
Lodderomyces elongisporus
Pathway
lel03030
DNA replication
lel03420
Nucleotide excision repair
lel03430
Mismatch repair
lel03440
Homologous recombination
lel03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PVL30_001171 (RFA1)
03420 Nucleotide excision repair
PVL30_001171 (RFA1)
03430 Mismatch repair
PVL30_001171 (RFA1)
03440 Homologous recombination
PVL30_001171 (RFA1)
03460 Fanconi anemia pathway
PVL30_001171 (RFA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lel03000
]
PVL30_001171 (RFA1)
03032 DNA replication proteins [BR:
lel03032
]
PVL30_001171 (RFA1)
03400 DNA repair and recombination proteins [BR:
lel03400
]
PVL30_001171 (RFA1)
Transcription factors [BR:
lel03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
PVL30_001171 (RFA1)
DNA replication proteins [BR:
lel03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
PVL30_001171 (RFA1)
DNA repair and recombination proteins [BR:
lel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
PVL30_001171 (RFA1)
MMR (mismatch excision repair)
PVL30_001171 (RFA1)
DSBR (double strand breaks repair)
HR (homologous recombination)
PVL30_001171 (RFA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
tRNA_anti-codon
Rep-A_N
DUF223
CDC24_OB3
POT1
TrAA12
DdrB
BRCA-2_OB1
RADX
Motif
Other DBs
NCBI-GeneID:
5235239
NCBI-ProteinID:
XP_001528682
UniProt:
A5DV16
LinkDB
All DBs
Position
1:complement(3253953..3255929)
Genome browser
AA seq
658 aa
AA seq
DB search
MTSFPLSKGALKKAFHKDTHDKVKCPLVFQITNMKAVDTVNNQRKYRILLSDGVYSTHGL
INENCTAYLENNNVSRYATIQVNRFSTLTSTKHFFFIEDFELLNNAGEKLVEKPISVDDY
FAEHPDEASAAITAKRGDSLDRNESPAPGGAGATPPVAQSTYPGQQQQQQQQQQQQQAVA
QNPQYPKPRGVGLGAGDKNGPRISPIETLSPYQNNWTIRARVSYKGELRTWSNAKGEGKV
FSVNFLDESDEIKASAFNETAEKAYNILEEGKVYYISKAKVAAARKKFNNLTHPYELQLE
KDSEITECFDESNVPKLNFNFVKLDQIQNLDANAIVDVIGALKVVNPPFQITAKSTGKAF
DRRDITIVDESGFAVDIGLWNQTAADFAVEEGSVIAFKGCKVSDFNGRTLSLTQSGSLIA
NPGIPESYHLKGWYDNIGVKENYKSLKTESGAGSNNLSVMERFAQRKMISQVEDENIGGQ
NGGEKLEYFSTKASLSYAKPENFAYPACPNILSQSGDASLSGAGARQNPCNKKLVQYDDK
WRCERCNMEFDRPTWRYILNCGIMDASGQIWVTLFDEQAKKLLGMEANELVELSQENQNA
AAEVIHRNYFREFNFRIRAKQDTFNDQLKIRYQCMGLTDIDYTAECDYLCKEIDSVLG
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgacttcgtttccgttatcgaagggtgctttgaaaaaggcattccacaaagatactcat
gataaagttaaatgtcccctcgtgtttcaaatcacaaacatgaaggctgttgacaccgtg
aacaaccaaagaaagtaccgtattcttttgagtgatggtgtatattcgacccatggtttg
atcaatgagaattgtacagcgtatttggaaaataacaacgtttcgaggtacgccaccatc
caagttaatagatttagtaccttgacatcaaccaaacacttttttttcattgaggatttc
gaattgctaaacaatgctggagagaaattggttgaaaagccaatatctgtggatgactat
tttgccgaacaccctgacgaggcttctgctgccatcacagcaaagagaggcgattcgctt
gatagaaatgagagtccagctccaggaggagctggtgccacgccaccagtggcacaatcc
acataccctggtcaacaacaacaacaacaacaacagcaacaacaacaacaggcagtggca
caaaatccacaataccccaaaccaagaggtgttggtttgggcgctggagacaagaacgga
ccaagaatctcacccattgaaacattgtctccataccaaaacaactggactattagagcg
cgtgtatcgtacaaaggtgaattgagaacttggtccaatgcaaagggcgaaggtaaagtg
tttagtgttaattttctcgacgagtcggacgaaatcaaagcttccgcattcaacgaaact
gcagaaaaagcctataatattcttgaggagggaaaagtttactacatctcaaaggcaaaa
gttgctgctgcgaggaaaaagtttaacaatttgacgcatccatatgaattgcaattggaa
aaggactcagaaatcaccgagtgttttgatgaatcaaacgttcctaaactcaatttcaat
tttgtcaagcttgaccagattcaaaacttggatgcaaacgctatcgtggatgttattggt
gctttaaaagtggttaatccaccttttcagattactgccaagtcgactggtaaagctttt
gatagaagggatatcactattgttgatgaatcgggatttgctgtagatattggtctttgg
aaccaaacagcagcagactttgccgtagaggaaggttcagtgattgcatttaaaggttgt
aaagtctccgactttaacggaagaacattgagtcttacacaatccggatcgcttattgca
aatccgggcattccagaatcgtaccatttgaaaggatggtacgataatattggagttaag
gaaaactacaaatcactcaagacagagtctggcgctggaagtaacaacctttcggttatg
gaaagatttgcccaaagaaaaatgatttcgcaagttgaagatgaaaacattggtggtcaa
aatggtggtgaaaaacttgaatattttagtacaaaggctagtttatcctatgctaaacca
gaaaactttgcatacccagcatgcccaaacatcttatcgcaatctggagacgcgtctttg
tcgggcgcgggagcaagacaaaatccatgtaataaaaaattagtgcaatacgacgataaa
tggagatgcgagcgttgtaacatggaatttgatagacccacatggaggtatattcttaat
tgtggaattatggatgcttcgggacaaatctgggtgactttgtttgatgaacaagccaag
aaattgttgggaatggaagcaaatgagttagtggagttgagccaggagaaccaaaacgct
gcagcagaagtgatccatagaaattactttagagagttcaactttagaatcagggccaag
caggatacatttaatgatcaattaaagattagataccagtgcatgggattaacagatatt
gactacactgcagaatgtgactatttgtgcaaagagattgactctgttttgggctga
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