Lodderomyces elongisporus: PVL30_001179
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Entry
PVL30_001179 CDS
T01116
Symbol
ECM16
Name
(RefSeq) putative ATP-dependent RNA helicase DHR1
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
lel
Lodderomyces elongisporus
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lel03009
]
PVL30_001179 (ECM16)
Enzymes [BR:
lel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PVL30_001179 (ECM16)
Ribosome biogenesis [BR:
lel03009
]
Eukaryotic type
90S particles
Helicases
PVL30_001179 (ECM16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
OB_NTP_bind
AAA_19
nSTAND3
Motif
Other DBs
NCBI-GeneID:
5235951
NCBI-ProteinID:
XP_001528690
UniProt:
A5DV24
LinkDB
All DBs
Position
1:3270753..3274964
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AA seq
1403 aa
AA seq
DB search
MGKYRKRFNEKARTGMLAKQAALKRARNKQFYNTGDEHDETPTTEVEQSNGGNSINNGVQ
PSNLSTQVIDDPNAQILKPVTEEERLARKRALEENLFTQNAKEAKISKAKKKRLDKYIEH
QLKREEKKILLEKLSETRMDTSKLSALKELGKGKLTKKEEMIEALELERQGRGDDRTRDI
LYETREVKEYGDSDEDNRNYFNNADSQEEEEEDEEQEGGAHILQNKKSTAFKQGDTNKAT
SSFVDNRPSKFGGSGFGFGFKNIPVIKMDENVPKKKYGWRKRIEMAEKKKSIEDEEDDFA
SSDDDDDHSDLEHTDSSGEEHTLDSETDDSDANDSEDEREEDDELIMKTNGKETVNTDTN
GKNLLKDDYEGRSEDISEEEEEEEEEEDEEDTGSSNSSYEDEDDDEEEEEEEELDENDKA
NSKLMQSKPRHSSIAKSFKEWAEQQIKVAEGRDDVPLRVEVSDKVKEKYAKPTIHEEDID
HSSDEEGYIPVNKNLKRDAFVVDVQRSDEIQQQRIGLPVFAEEHRIMEAVYHHDCIILCG
ETGSGKTTQVPQFLYEAGFGNKDNKLYSGMIGITQPRRVAAVSMAKRVGQELGNHENRVG
YQIRFDTTIKDEGTATGTAMKFMTDGVLLREMMSDFLLTKYSAIIIDEAHERNINTDILI
GMLTRILNLRRKYHNQDPTKYKPLKLIIMSATLRVSDFSENSTLFKVPPPIINIETRQYP
VSVHFNKKTEFEYLDEAFRKACKIHRKLPLGGILIFLTGQSEITTLVKILRTEFSEKKNK
TKSIGGGKSGGEITNPRGQHVYKDNIDDDNDDGNSNHNTEVRKVEVSEHVQQEAEDIEFD
IDAIDASIYDDKDDYNDDDEEEEEEEGFEEAEERKAEDVGPLHVLPLFSLLPTKEQMKVF
NDPPKGSRLCVVSTNVAETSLTIPGIRYVIDCGRAKEKKFNKDNGVQSYEVDWISKASAN
QRAGRAGRTGPGHCYRLYSSAVFEEFFPQFSVPEILRTPFESVVLSMKSMGIDIIHNFPF
PTPPDRSSLKNAERVLVTLGALDQKSKQITDLGKKMGLFPLSPRYAKILIVGNQQNCLDY
IIAIVSALSVGNPFISENELIRNSEAMDEEARKELRSRFFKSKAMFSKLDSSSECMMLLS
AVCAMDHVPQDKLQAFYASNFLRPKIMEEIQKLRKQLDSIVQRCLKEVDKLISDESSNRN
KAKALTVPSSKQVGAMKQMIASGFVDQVAIRGDLISADVKVADRTRIISIPYCPVLPVSK
DDPFVYIHANSLVANSGALPGAYIVYQSLSSKSSAQDENVKVRMSPLVDISGKQLTNIAK
SSPLLSFSKPLGHPYAPKNLTPNKRECYVVPRFGATLGTGGVGWDLPAIKIMQEKKQGHW
VLAETTQKSSNGSASARSSGKNF
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atggggaaatacagaaagaggttcaatgaaaaggccagaactggaatgcttgcaaagcag
gcagctttgaaaagagcaaggaataagcagttttacaacacaggtgatgagcacgacgaa
acaccaaccacagaagttgaacaatccaatggcggaaatagtattaataatggtgttcag
ccaagtaatctttcaacgcaagttattgacgacccaaatgctcaaattttgaaaccagtg
acagaggaagagagacttgctagaaagcgggcattggaggagaatcttttcacacaaaat
gcaaaggaggcaaagatctcaaaggccaaaaagaagcgattagacaagtacatcgagcat
cagcttaaaagagaggaaaagaagattttattggagaaattgtccgaaactcgaatggat
actagcaaattgtctgccttgaaggaactcggaaagggtaaacttaccaaaaaagaagaa
atgattgaagcattggagttggaaagacaaggtagaggcgatgaccgaacacgagatata
ttatatgaaacaagagaagttaaggaatacggagacagtgatgaggacaatagaaactat
ttcaacaatgctgattcccaagaagaagaagaagaggatgaggaacaagaaggaggggct
catatactccagaataagaaactgacggcttttaaacagggcgatacaaacaaagctact
tcttcatttgtggataacagaccttcaaagtttggtggttcagggtttggatttgggttt
aagaatattccagtgatcaaaatggatgaaaatgtgccaaagaagaaatatggatggagg
aaacgaatagagatggcagagaagaaaaaatcaattgaagatgaagaagacgattttgcc
agttctgatgatgatgatgatcatagcgatttggaacatacagatagcagtggtgaagag
catacattggactctgaaacagatgacagcgacgctaacgatagcgaagatgaaagagaa
gaagatgatgagttgataatgaaaacaaacgggaaagaaaccgtaaacactgatacaaac
ggaaaaaatttgctcaaggatgattatgaaggtagatctgaagacatctccgaagaagaa
gaggaagaagaggaagaagaagatgaagaagataccggtagcagcaactcgagttatgaa
gatgaagacgatgatgaagaggaggaggaggaggaggaattggatgaaaatgacaaagca
aactcgaaattgatgcaaagcaaacctcgtcactccagtatagcaaaatcattcaaagaa
tgggctgaacaacaaatcaaagttgccgaaggtcgtgatgatgttccccttagagttgaa
gtttctgataaagtaaaggaaaaatacgctaaaccaacaatccatgaagaggacatcgat
cattcttctgatgaagaaggatacataccggtgaataaaaaccttaaaagagatgcattt
gttgttgatgtgcaacgactggatgaaatacaacaacaaagaataggtttgcctgtgttt
gcagaggagcacaggattatggaagccgtgtatcatcacgattgtataattttgtgtggt
gagactggttctggtaagactactcaagtgccacagtttttatatgaggccgggtttgga
aacaaagacaataaactatattcaggaatgattggaatcactcaacctagaagggttgct
gctgtttccatggccaagagggtaggacaagagttgggcaaccatgaaaaccgtgtaggt
tatcagatcaggtttgacactacgatcaaagatgaaggaacagccactggaacggccatg
aaatttatgacagatggtgtcttgctcagggaaatgatgtctgattttttgcttaccaaa
tattctgcaattatcatcgatgaagctcatgagagaaacatcaataccgatatcctcatt
ggtatgttaacgagaatattgaacttgcggagaaagtaccataaccaggacccgacaaaa
tacaagccgcttaaactcataattatgtcggccacattaagagtttctgatttttctgaa
aactcaacattattcaaagttcctccaccaataattaatatcgagacaagacagtatcca
gtatcagtccactttaacaaaaagaccgagtttgagtatttagatgaagcattcaggaag
gcatgtaaaatacataggaaacttccacttggtggaatcttgatttttcttacaggccaa
tccgaaattacaactttggtgaaaatattgagaaccgaattttcagagaaaaaaaataaa
acaaagagtattggcggtggtaagagtggcggggagattactaaccctcgtggtcaacat
gtttacaaagacaatatagatgatgataatgatgatggcaatagtaatcacaatactgag
gttcgaaaggtcgaagtgtccgaacatgtccagcaagaagcggaggatattgaattcgat
attgatgcaattgatgcctcgatctacgacgataaagatgattacaatgatgatgatgaa
gaagaagaagaagaagaaggttttgaggaagccgaggaaaggaaagctgaggatgtgggg
cctttgcacgtgttgccccttttctctcttttaccaaccaaggagcaaatgaaagttttc
aatgatccacccaagggtagtagactttgtgttgtgtctacaaatgtagcagaaacttcc
ttgactattccaggtatacgttatgttattgattgtgggcgagctaaggagaaaaaattc
aacaaagataatggtgtgcaatcctatgaagtggactggatttctaaagcatcagccaac
caaagagcaggaagggctggtagaactggtcctggtcattgctacaggctttactcttct
gcagtttttgaagagttttttccacaatttagcgtaccagaaatacttcgaacacctttt
gaaagtgttgttttgagtatgaagtctatgggaatcgacattattcacaattttcctttt
cctacacctccagaccgttcgtcgcttaaaaacgcagaacgagtactcgtgacacttggt
gcacttgaccagaaactgaaacaaattactgacttgggtaaaaaaatggggttgttcccg
ttgagtcctcgttacgccaaaattttaatcgttggaaaccagcaaaactgtttggattat
ataatagccatcgtttcagcattgagcgttggaaacccatttattctggaaaatgaactt
attagaaatctggaagcaatggatgaggaagcacggaaagagcttaggtcgagattcttt
aaatcaaaagcgatgttttcaaaactcgactcatcgagtgagtgtatgatgttgctttca
gcagtctgtgccatggatcacgttcctcaggataaactccaagcattttatgcttcgaat
tttttacgacctaaaattatggaggaaatacaaaagcttcgcaaacaactagattcaata
gtccaaaggtgtcttaaggaggttgataaattgataagtgacgaaagcagtaacagaaat
aaagctaaagcactaaccgtaccatccagtaaacaagttggcgctatgaagcaaatgatt
gcatctgggtttgttgatcaagttgctattcgtggtgatttaatttctgctgatgtgaaa
gtggcggataggactcgcattataagtattccttattgcccagtgcttccagtaagtaaa
gatgatccatttgtatacatccatgccaactcattggttgctaactcgggtgcccttcct
ggcgcttacattgtttaccaatcacttagttcaaagagttctgcacaagatgaaaatgtt
aaagttaggatgagtccattggtcgatataagtgggaaacaattgacaaatatagcgaaa
agttccccgcttctttctttttccaaaccgttgggtcatccttatgcaccaaagaatttg
acaccaaataaaagagaatgttatgtcgtgccccgttttggagctacactagggacaggc
ggagtgggatgggatctacccgccataaaaattatgcaagagaagaaacaaggtcattgg
gtattagctgaaacaacacagaaaagcagcaatggtagtgctagtgctagaagtagtggt
aaaaacttttga
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