KEGG   Lodderomyces elongisporus: PVL30_001216
Entry
PVL30_001216      CDS       T01116                                 
Symbol
RFC5
Name
(RefSeq) Replication factor C (RF-C) subunit
  KO
K10756  replication factor C subunit 3/5
Organism
lel  Lodderomyces elongisporus
Pathway
lel03030  DNA replication
lel03410  Base excision repair
lel03420  Nucleotide excision repair
lel03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:lel00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PVL30_001216 (RFC5)
   03410 Base excision repair
    PVL30_001216 (RFC5)
   03420 Nucleotide excision repair
    PVL30_001216 (RFC5)
   03430 Mismatch repair
    PVL30_001216 (RFC5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:lel03032]
    PVL30_001216 (RFC5)
   03036 Chromosome and associated proteins [BR:lel03036]
    PVL30_001216 (RFC5)
   03400 DNA repair and recombination proteins [BR:lel03400]
    PVL30_001216 (RFC5)
DNA replication proteins [BR:lel03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    PVL30_001216 (RFC5)
  DNA Replication Termination Factors
   ELG1-RFC complex
    PVL30_001216 (RFC5)
Chromosome and associated proteins [BR:lel03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    PVL30_001216 (RFC5)
DNA repair and recombination proteins [BR:lel03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     PVL30_001216 (RFC5)
  Check point factors
   HRAD17(Rad24)-RFC complex
    PVL30_001216 (RFC5)
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 Rad17 AAA AAA_22 AAA_24 AAA_16 Rep_fac_C nSTAND1
Other DBs
NCBI-GeneID: 5235788
NCBI-ProteinID: XP_001528727
UniProt: A5DV61
LinkDB
Position
1:complement(3360547..3361635)
AA seq 362 aa
MSLWVDKYRPKTLAQLSYHKDITQNLQALSKSGDFPHLLVYGPSGAGKKTRIYATLHAIF
GVSVEKLKIDVKTFTTPSNRKLEFNVLSSPHHLEITPSDMGNNDRVVIQDLLKDVASTEQ
VDFGNQSSKRHRFKVVIINEADSLSRDAQAALRRTMEKYSSNIRLILVCNSISNIIAPIK
SRTLLVRIPSPSVAEISSILHDVAQEEKVKFSSTDQQALTGFYEQVATVSNRNLRRALLA
FETICMQNETINVKQMHSVIVLDWELIIRNMAKSISTTRNVANLAKLRTATYELLSHCIP
ARTILKGLLFELIKLEKGKTKLIAEIVKIASIFDERLSLGTKSIFHIEGFIAKSMVAIDD
LS
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgtctctttgggttgataaataccgtccaaagacgctagcgcagctctcataccataaa
gatataactcaaaacttacaagcactttccaaatcgggagattttccacatctattagtt
tatggtcctagtggagcagggaagaaaaccagaatatacgcaacactccatgctatattt
ggtgtatcggttgagaaactcaagattgacgtaaagacattcaccacaccttcaaatcgt
aagttggagtttaatgtgctaagctctccacatcatttggagattactccttccgatatg
ggaaacaatgaccgtgttgtgattcaggatttattgaaagacgtggcatcaacagaacaa
gttgattttggtaaccaaagcagcaagagacacagattcaaagtggtgattatcaatgaa
gctgatagtttaagtagggatgcacaagcagcattgagaaggacaatggagaaatactcg
tcaaacattagattaatccttgtttgtaactcaatctccaatataattgcgcccattaaa
tcaagaaccttattggtgaggatacctagtccatctgtggcggaaatcagtctgattttg
catgatgtcgctcaagaagagaaggtgaagttctcttccaccgatcaacaagctctcact
ggattttacgagcaagtggcaacggttagcaatcggaatttgagaagagcattgttggcg
ttcgagaccatttgcatgcaaaatgagacaattaatgtcaagcaaatgcactccgttata
gttctcgactgggaactcatcatacgcaatatggccaagtcgatatcgactactagaaat
gttgcaaatttagccaaacttaggacggcaacttatgagttattatcccactgcattcca
gctagaaccatactcaaaggattattatttgagttgatcaagttggaaaagggcaagacg
aaacttatagcagaaattgtgaaaattgcatccatttttgatgagagattaagtctcgga
acaaaatcgatattccatatagagggatttattgcaaaatctatggtggctatcgatgat
ttgtcgtaa

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