Lodderomyces elongisporus: PVL30_001250
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Entry
PVL30_001250 CDS
T01116
Symbol
NMD2
Name
(RefSeq) mRNA decay protein
KO
K14327
regulator of nonsense transcripts 2
Organism
lel
Lodderomyces elongisporus
Pathway
lel03013
Nucleocytoplasmic transport
lel03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
PVL30_001250 (NMD2)
03015 mRNA surveillance pathway
PVL30_001250 (NMD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lel03019
]
PVL30_001250 (NMD2)
Messenger RNA biogenesis [BR:
lel03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
PVL30_001250 (NMD2)
mRNA cycle factors
P-body specific factors
PVL30_001250 (NMD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
MetOD2
Motif
Other DBs
NCBI-GeneID:
5235374
NCBI-ProteinID:
XP_001528758
UniProt:
A5DV92
LinkDB
All DBs
Position
1:complement(3469809..3473201)
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AA seq
1130 aa
AA seq
DB search
MTVELDGRRKELLELNLKSWENEYTLPVATKLDSSLKKNTAFIKKIKTSLNHDQLKNILS
DIKSLSLEKYLSEVIVSLVEGMVKVSKSDDIAATMEICSAFHQRFGVDFTGDMMNQVLVY
MLNHRDQDAADDEKATQQIISRQKNLLRLMGEFYAVKIIRTGSDILSSIDPKIVKSYNLD
KKRNEPLITLLLKYLLNFDLEQGRCLSAVHSFLKRFRHLIFDSENDILDSEVKHVLKQIF
TIYTEATLKVAVELKNKVGKLQVRNKKASIRTGRILEEEESELQEATILFANFKQTLEFL
APLVDVSLPSTILDADLLDDTNGNELEISNENTVEVVKQKSSGMEEDAYGIWEDAKEKAF
YTIIPSLEELLSSMQKEQGEETLSKRENLDESQSSGGKIQDFLNRLEDVRSNDMDQLVVE
FNNLQLNNKATRNRIMRFFIETSTLNNLRYYTRFLKINESNLKELIEDLITYLDNGFRSQ
LHRNKLNVKNILFFCELVKFKMIPIHVIFHKIRRLTLDITSTNNIEILSVFYENVGRFLL
HEPEYKDLMRGMIDLLKEKSKQSNLKVNDKLAINNLLIMVEPPAVKVQREVIELSPKSQF
VQKLIRSELNKNTILLISRLLKKVFASNVGEEESQALLDSFARPDLLNYDNLPALAKLLH
TFADKRVIVIIVDTIVENIIRGLELNDFRMNRARMSQVKYIAEMYNHGLLNYKLINDLLY
RILCYGHPQNQPLPNNWDIDIDLPNNYFRIQMCCLLLLSLQSVHVEILPSLKKNTNKAKA
RAKAKARAKGKGKGKGKANMADTAGADTDYENEDAEFKKRKEVNENLLSVFVTFFQYYMY
CKEAPFPVDVKFKLDDMFKKFENVPGVIRYESVRDVVKKLAESIQTKEDAETYLENEEEN
ASEPLGDDEDDEDEDDEDDEEDDVDDEEDDEDDNEDEDIEIDPEEEEDDDEEEEVGETDS
EEGDSDSDEEDSESDDDETDSEDEEDEDEEDDIDFSDVSDDESLPDAMSELEKERIEAEK
KFQSDLDKEFQRIMIESYGTSTQGQVGNTRKPLPAPGQLFQENQNRPNVASNGKIKFGLL
TKSGAGGKTNTVKQLHLPSDNKFAESVLREQENRKRDRQRIMSLASQMGD
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgacagttgaattagatggtcgccgtaaagaattgttggagctaaacctcaaaagctgg
gaaaatgaatacaccttgccggttgcaaccaaattggactcatcgctcaagaagaataca
gcgtttatcaagaaaataaagactagcttaaatcatgaccagttaaagaatattttgtct
gatatcaagagtttgtctttggaaaaatacctttcagaggttattgtttctctagttgaa
gggatggtcaaagtttccaaaagcgatgatattgccgccacaatggaaatctgctctgca
ttccatcaaagatttggcgttgattttacaggagacatgatgaatcaggtcttggtctat
atgttaaatcatcgagaccaagatgccgctgatgatgaaaaagcaacgcaacaaatcatc
tcgcgtcaaaagaatcttttaaggttaatgggggaattttatgcagtgaaaattattaga
acaggtagtgatatcttgagctccattgatcccaagattgttaaactgtataatttggat
aaaaagagaaatgaacccctcatcacgttattattgaaatacttgcttaactttgatctc
gagcaaggtcgatgtttgagtgctgttcattcttttttgaaaaggtttcggcatttgata
tttgatctggagaatgacatcttggactccgaggttaagcatgtattgaaacaaatattt
acaatatacactgaggcaactctcaaagtcgcagtagagttgaaaaataaagtaggaaaa
cttcaagtcagaaacaaaaaggcatcaataaggacgggacgcatcttggaggaagaggaa
ctggaattacaagaagctacaattctttttgcaaacttcaaacaaactttggaatttctt
gcacctcttgtagacgtgtcattaccaagcaccattcttgatgctgaccttttagatgac
actaatggtaatgaacttgaaattagtaatgaaaacacagttgaagtggttaaacaaaag
tccagtgggatggaggaagatgcttatggaatatgggaagatgcaaaggaaaaagctttt
tatacaataatcccgctgttggaagagttgttgtcatcaatgcaaaaagagcaaggagaa
gaaacgttatcaaaacgagaaaatttagatgagtctcaatcatctggtgggaagattcaa
gatttcttgaatcgtttggaagatgtcaggtccaatgatatggatcaattggtggtggaa
ttcaataacttacaattgaataataaagctacaaggaatagaataatgcggtttttcatt
gaaacatctaccttgaacaatttgcgttattatactagatttctcaaaattaatgaatcg
aatttaaaagagttgattgaagatctaatcacgtatttggataacggattcaggtcacag
ttgcacagaaacaagttgaatgtgaagaatattctatttttctgtgagttggtcaaattc
aaaatgattcccattcatgtcatttttcacaaaattagaaggctaactttggatatcaca
tcaaccaacaacattgagattctttccgtcttttacgagaatgtgggaagatttcttttg
cacgagccagagtataaggatctcatgagaggaatgattgatttgcttaaagagaaactg
aagcagtccaatttgaaagttaatgataaacttgccatcaataatcttctcattatggtt
gagcctccagctgttaaagtgcaaagagaggtgatcgagttgtcgccaaaactgcaattt
gttcagaaattgataaggtcggagctcaacaaaaatactattttgttgatctcgcgtctt
ttgaaaaaagtttttgcttcaaatgttggtgaagaagagtcccaagcattgttggacagt
tttgcccgccccgatcttctcaactatgacaatttgccagcattggccaagcttttgcat
acatttgctgacaagagagtcatagttatcattgttgatactattgttgaaaacattatc
cgtggcttagaactcaatgatttcagaatgaatcgcgctagaatgtcgcaagttaaatat
atcgctgagatgtacaaccatggacttttgaattacaagttgattaatgatttgttgtat
cgtatcttgtgctatggacacccacagaatcagccattgcccaacaattgggatatcgat
atcgatttaccgaataattatttccgtattcaaatgtgctgtttattgttgctttcttta
caatctgtccacgtcgaaattctccctctgttgaaaaagaatacaaataaagctaaagcc
agagcaaaagcaaaagcaagagctaaaggcaaaggcaaaggtaaaggtaaagctaatatg
gctgacactgccggcgcagatacagactacgaaaatgaagacgcagaattcaagaaaaga
aaagaagttaatgaaaatcttttgagtgtgtttgtaacattttttcaatactacatgtat
tgtaaagaggcgccattcccagttgacgtgaaattcaaattagatgatatgtttaaaaag
tttgagaatgtacctggcgttatcagatacgagtctgttcgagatgtagtgaagaaattg
gcagagctgattcaaaccaaagaagatgcagaaacttatttggaaaatgaggaagagaat
gcttctgagccgcttggagatgatgaagacgatgaggatgaggatgatgaggatgatgaa
gaggatgatgtggatgatgaagaggatgatgaagacgacaatgaggatgaagatattgag
atagacccagaagaagaagaagacgacgacgaagaagaagaagtaggtgagacggatagt
gaagaaggagattctgatagcgatgaagaggattctgaaagcgacgatgacgagactgat
agtgaagatgaagaagatgaggacgaagaggatgatatagattttagcgacgtgtcggat
gatgaatccctacccgatgctatgtccgagcttgaaaaagagcgaattgaagcagaaaag
aagttccaaagcgatttggataaagaatttcaacgtataatgattgagtcgtatggtaca
tcaactcagggtcaggttggtaatacaagaaaaccacttccagcgcctggtcaacttttc
caggagaaccaaaatagacccaatgttgcatctaatggcaagataaaatttggattgttg
acaaagagtggtgcgggtggcaagaccaacactgtgaaacagttgcacttgccgagtgat
aataaatttgccgaatctgtattgcgtgagcaagaaaataggaaaagagatcgacaaaga
attatgtcgttggcctcgcaaatgggcgactag
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