Lodderomyces elongisporus: PVL30_001815
Help
Entry
PVL30_001815 CDS
T01116
Symbol
CSL4
Name
(RefSeq) exosome 3'->5 exonuclease subunit ski4 (Csl4)
KO
K07573
exosome complex component CSL4
Organism
lel
Lodderomyces elongisporus
Pathway
lel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVL30_001815 (CSL4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lel03019
]
PVL30_001815 (CSL4)
Messenger RNA biogenesis [BR:
lel03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PVL30_001815 (CSL4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
PVL30_001815 (CSL4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EXOSC1
CSL4_N
FlaG
CC190
DUF702
Motif
Other DBs
NCBI-GeneID:
5233743
NCBI-ProteinID:
XP_001527013
UniProt:
A5DWV5
LinkDB
All DBs
Position
2:1367514..1368458
Genome browser
AA seq
314 aa
AA seq
DB search
MNSKIVVPGQYIVPTYKLENDQPIRYIPGRGTVVNQIQDPDSKKYLPVICATIVGSTYIT
KESNSESKSESESEPKEVDENSNSAEHKVKAATSGDKINLDETTSTYVVHVVAKGDSLPS
NGVGAFDPVSTSINLPKENDIVLVRITRISQKQAWCEILAMENKHGHFQKNILADSGLGS
NGATSHASLPAGGGSQHNFNIQSVASNTSNAQIYDIGENFRGIIRSQDIRSTERDRVVVG
ECFKPGDIVRAQILSLGDGQNYYLSTAKNNLGVVFAKSEGGAGSLMYPIDWQNMLDVDTG
IVEKRKNANPFESI
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
atgaattcgaaaatagtcgtacctggccagtatatagtgccgacatataagcttgaaaat
gatcagcctattcgatacatacctggcagaggcacagttgtcaatcaaatacaagatccc
gattccaaaaagtacttacctgttatatgtgccactattgttgggtcaacgtacataaca
aaggagctgaatctggaactgaagctggaatcggaatcggaaccgaaggaggttgatgaa
aattcaaacagtgcggagcataaagtgaaagctgccacactgggagataaaattaatttg
gacgagacaacctccacatacgtagtccatgtcgtagccaaaggagattcgcttccctca
aatggagtcggagcgtttgaccctgtatcgacatcaataaatcttcccaaggaaaatgac
attgttctagttaggattacacggatatctcagaaacaagcatggtgtgaaatccttgcg
atggaaaacaaacacggccactttcaaaagaatatccttgctgactctgggctaggctct
aatggtgctacttcgcatgcttcattgccagctggtggtggatctcagcataattttaac
atccaaagtgttgcatcaaacacttcgaatgcgcagatatatgatattggagagaatttc
agaggtataataagaagccaagatatcagatcaactgaacgagatcgagttgttgttggg
gagtgtttcaagccaggtgatattgtgagagcacagattttgagtcttggtgatggacaa
aattattacttgtccactgcaaaaaacaatttgggtgtagtgtttgcgaaaagtgaaggt
ggtgctggctctttgatgtaccctattgattggcaaaatatgcttgatgttgatacaggg
atagttgagaagaggaaaaatgccaacccatttgaatcgatttag
DBGET
integrated database retrieval system
