Lodderomyces elongisporus: PVL30_001877
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Entry
PVL30_001877 CDS
T01116
Symbol
RRP46
Name
(RefSeq) exosome non-catalytic core subunit rrp46
KO
K12590
exosome complex component RRP46
Organism
lel
Lodderomyces elongisporus
Pathway
lel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVL30_001877 (RRP46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lel03019
]
PVL30_001877 (RRP46)
Messenger RNA biogenesis [BR:
lel03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PVL30_001877 (RRP46)
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
5234376
NCBI-ProteinID:
XP_001527079
UniProt:
A5DX21
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All DBs
Position
2:1521522..1522226
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AA seq
234 aa
AA seq
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MTFEVNTSILPNADGSAELVYTNNGTKVLCSVSGPIEPKPRQELPQQASLEIIVRPARGL
STTREKLIEDKLRSLLQNIIIRYKYPRQLISIVVQFLVVDEDPVYLTNELSAAINCCFFA
LVDADVALYWSFASVAVCIKGDGSGDGEQLIKSPTGKEIAQSDSFHVVCFGIENGKVEKL
LLLESAGDFTESQLFDMLGQTVGDVESLHQLQRKAITKKVEGDYIWRGPIEQES
NT seq
705 nt
NT seq
+upstream
nt +downstream
nt
atgacatttgaagtaaatacatctatattaccgaacgcagacggctcggcagaacttgta
tacaccaataacggcacaaaagttctctgttccgtttccggtcctattgaacccaaacca
cgtcaagaacttccacaacaagcgagtcttgaaataatcgtgcgacctgctcgtggtctt
tctaccacaagggaaaagttgattgaagataaattacgttcgcttttacaaaacattata
atcagatacaagtatccgcgacaattgatcctgattgttgtgcaattcttggtggttgat
gaggatccagtatacttgacgaacgagttgagtgctgctatcaactgctgtttctttgca
ttggtagatgccgatgttgccttatactggagttttgctagtgttgccgtatgtatcaag
ggagatggttcaggagatggtgaacaattaatcaagagtcccacagggaaagaaattgcg
caaagtgattctttccatgtagtgtgttttggaatcgagaatggcaaggtggagaaattg
ttattgttggagagtgcaggtgactttaccgaactgcagttgtttgatatgttgggccag
accgtgggggatgtggaaagtttacatcaattgcaaaggaaagctattacaaagaaagtt
gaaggtgattatatatggagaggtcccattgaacaagaaagctga
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