Lodderomyces elongisporus: PVL30_002099
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Entry
PVL30_002099 CDS
T01116
Symbol
cdc17
Name
(RefSeq) ATP-dependent DNA ligase Cdc17
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
lel
Lodderomyces elongisporus
Pathway
lel03030
DNA replication
lel03410
Base excision repair
lel03420
Nucleotide excision repair
lel03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PVL30_002099 (cdc17)
03410 Base excision repair
PVL30_002099 (cdc17)
03420 Nucleotide excision repair
PVL30_002099 (cdc17)
03430 Mismatch repair
PVL30_002099 (cdc17)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lel03032
]
PVL30_002099 (cdc17)
03400 DNA repair and recombination proteins [BR:
lel03400
]
PVL30_002099 (cdc17)
Enzymes [BR:
lel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
PVL30_002099 (cdc17)
6.5.1.6 DNA ligase (ATP or NAD+)
PVL30_002099 (cdc17)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
PVL30_002099 (cdc17)
DNA replication proteins [BR:
lel03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
PVL30_002099 (cdc17)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
PVL30_002099 (cdc17)
DNA repair and recombination proteins [BR:
lel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
PVL30_002099 (cdc17)
NER (nucleotide excision repair)
Other NER factors
PVL30_002099 (cdc17)
MMR (mismatch excision repair)
Other MMR factors
PVL30_002099 (cdc17)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
5234261
NCBI-ProteinID:
XP_001527297
UniProt:
A5DXN9
LinkDB
All DBs
Position
2:2115573..2117933
Genome browser
AA seq
786 aa
AA seq
DB search
MHSLRRNLIKTEKLVKLKCLGCLKNTTMAQQQTLGRFFGSSASIQASKPKAKAKAEKTTT
SPTKSAPIKLTKRANSLDKNGDVTSSLSAKKRKVTESNQDYEDANLSLNNDRSSQENNSE
EMDSEMTTENNEKEKEEAKSLIKLSEEQQKNKTQGSENQKSLATAKIPYSLLTDIFESIE
HESSRLKITAIISQFFLEILQQQQQEGDVSKLVKIVYLFINRLGPDYEPDLELGLGETLL
IKAISECYGRTPTKIKQDYKEVGDLGLVAQKSRSGQPTMFKSADLDVDTVFENLTKIAKS
TGKDSQSKKIGIINKMLTACQLKHNEAKFLIRSLEGKLRIGLAEKTVLVGLAQAFVNFEA
WKNNGNNKRIDPAKLVEAEDTMREAFTRIPNYQVLIENAYKYGIFNLLDHSQLTPGIPLK
PMLAKPTKSMSEVLDRFQDEKFTCEYKYDGERAQVHLSSDGQVRIYSRNSEDMSQRYPDL
ISIIKEFSKTQEHTSMILDCEAVAWDRVQKKILPFQVLSTRKRKDVNEKDITVFICLFAF
DILYYNNTSLITKSLKERREIMFKHLTPIEGKFQFATSKDSTSLEVLQQFLDQSVKDSCE
GLMVKMLEGTESYYEPSKRSRNWLKLKKDYLEGVGDSLDLVVIGAYSGRGKRTGTYGGFL
LASYNQDTGDLETTCKIGTGFSEEDLAKLYERLHPTEIPKAKEYFVYDKTNSNAVPDVWF
EPSVLFEVLTADLSLSPIYKAAHSEYGKGISLRFPRFLRLRDDKDIEDATSSTQVSEFYQ
RQAHLS
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgcacctgctcaggaggaacttgataaaaactgagaaacttgtaaagctcaaatgttta
gggtgtttgaagaatacaaccatggcacagcagcaaactttaggacgattttttggctcg
agtgcatcgatacaagcctcaaaaccgaaagcaaaagcaaaagcagaaaaaaccactaca
tcgcccactaaatcagcaccaatcaaactcacaaagagagccaattccttggacaagaat
ggtgatgttacctccagtctatcggccaagaaacgaaaagtgactgaaagtaatcaggat
tatgaggatgcaaacttgtcgcttaacaatgaccgttccagtcaagaaaataattcggaa
gagatggacagtgaaatgactacagaaaacaatgaaaaggaaaaagaagaagcaaagtct
ttgattaagttgagtgaggaacaacaaaagaataaaactcaaggatccgagaatcaaaaa
tcacttgcaacagcaaagatcccatactctttattaacggacatttttgagtctatcgaa
cacgaatcatctaggttgaaaatcaccgcgattatatcgcagttctttcttgagattttg
cagcagcagcagcaagaaggagatgtttccaaattggtcaaaattgtttatctattcatc
aacaggttgggtccagactatgaacctgatttagaattgggccttggagaaaccttgttg
attaaagccattagtgagtgttacggcagaaccccaacaaaaatcaaacaagactacaag
gaggttggagatttgggtctagtggcacagaaatctagatctggtcaaccaacgatgttc
aaatctgcagatttggatgtggacacagtatttgaaaacttgaccaagatcgccaagtct
accggaaaagattcgcaactgaaaaagattggaatcatcaacaagatgttgactgcgtgt
caattaaagcacaatgaagccaaatttctcatccgctcattggaaggtaaactaaggatt
gggttggccgagaaaactgtgctcgttggattagcgcaagcatttgttaattttgaagct
tggaaaaacaatggaaacaataaaagaattgaccctgcaaaacttgtagaggccgaagat
actatgcgtgaggcatttacacggatcccaaattaccaggtacttatcgaaaacgcatac
aagtacggcatttttaatttacttgaccatagtcagcttaccccgggcataccattgaaa
cctatgttggcaaaaccaacaaaatcaatgagtgaagttttagatagatttcaagatgaa
aagttcacttgtgaatacaagtatgacggagaaagggctcaagtgcatttgtcttctgat
ggccaagtacggatctattcgagaaactcagaggacatgtcgcagaggtatcctgattta
atttcaattatcaaagagtttagcaaaactcaagaacatacctcaatgattttggattgc
gaggctgttgcttgggatagagttcagaaaaagattttgccattccaagtcttatctaca
agaaagaggaaagatgtgaatgagaaagacattaccgttttcatctgcttatttgcattt
gatatcttgtattacaacaacacatcattaatcacaaagtctctcaaagagagacgcgaa
attatgtttaagcatttgactcctatcgaaggtaagtttcagtttgcaacatcaaaggac
tctacctcactagaggttttgcaacaattcttagatcaaagtgtcaaagactcgtgtgaa
ggtttgatggtgaagatgctagagggtactgaatcatattatgaaccctcaaaaagatct
agaaactggttaaagttgaagaaagattacctcgagggtgttggagactccttggatctt
gtggttattggtgcatatagtgggcgtggtaaacgaacaggaacatatggtgggtttttg
ttggcttcatacaaccaagatactggggatttggagacaacatgtaaaataggtacaggg
ttcagcgaggaggacttggcaaaactatatgagagattacaccccaccgagatccccaag
gcaaaggaatactttgtttatgacaagacaaattcaaatgccgtgccggatgtatggttt
gagcctagtgtactatttgaagttttaactgctgatttgtcgttaagtcctatatacaag
gcagcgcatagtgaatatggtaagggaatatcattgaggtttcctagattcttacgtctt
cgtgacgacaaagatatagaagatgcaaccagctctacccaggtgagtgaattttaccag
cgtcaagcccacctcctgtaa
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