Lodderomyces elongisporus: PVL30_002113
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Entry
PVL30_002113 CDS
T01116
Name
(RefSeq) uncharacterized protein
KO
K10570
DNA excision repair protein ERCC-8
Organism
lel
Lodderomyces elongisporus
Pathway
lel03420
Nucleotide excision repair
lel04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
PVL30_002113
09124 Replication and repair
03420 Nucleotide excision repair
PVL30_002113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lel04121
]
PVL30_002113
03400 DNA repair and recombination proteins [BR:
lel03400
]
PVL30_002113
Ubiquitin system [BR:
lel04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
PVL30_002113
DNA repair and recombination proteins [BR:
lel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
PVL30_002113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_RIG_2nd
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_SPT8
Beta-prop_Nup120_160
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF4
WD_LRWD1
KNTC1_N
Motif
Other DBs
NCBI-GeneID:
5234489
NCBI-ProteinID:
XP_001527310
UniProt:
A5DXQ2
LinkDB
All DBs
Position
2:complement(2158694..2160067)
Genome browser
AA seq
457 aa
AA seq
DB search
MQSLILQRRTGVISPLEFSRTLADKNYQSQLFQTAKYNVFPMNAHHNASVNALSMDSDEN
RFLLSGCGDSSIKIWDTNEQEKIREENEIDLSKMNHPAKYDLFDYDNPVSVFKNMATVPR
KTEHQFGVSAIQWWPYDTGMFVSSSFDHTIKVWDTNELCSVHTFNLNNRVYSVDLNGPKS
LVAAASDQPFIRILDVRSTSSAHTLKGHKGKTLSVKWHPLNEHLLASGGYDGQAKIWDIR
RSENLLCSLDMHHTNKQANTTFGLKKTTSTSISAPASAKAHSGPVNGLSWDESGTTLYTA
GNDDKIRVWDMVGSSYPPVNKLINFGPLTRNKYTQTIPILLNPMGETNLQYLLFPSESGE
ILVHRTIDGKLVNRLGRKGSKNIGRTCSMCNGGPNTGSYICGTVDGELICWQVFSDYIDL
SEIFEERKEEEEDVERLLLKKHTLALKAKNLMKSLEV
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgcaatctctaatactacaaaggagaacaggcgttatttcgcctcttgagttttcacga
acattggccgataaaaactatcaatcccaattgtttcaaacggcaaaatacaatgttttc
cccatgaatgcgcaccataatgcactggtgaatgccctatcgatggattcagatgaaaat
aggtttctccttagcggatgcggtgattcgagtataaaaatatgggacacgaacgagcaa
gagaagattagagaagagaatgaaatcgatttgagcaaaatgaatcatccggcaaagtat
gatttgtttgactatgataaccccgtttctgtctttaagaacatggcaacagtgccacgg
aaaaccgagcatcaatttggagtttcggcgattcaatggtggccctacgataccggtatg
tttgtctcatcttcctttgaccacaccataaaggtttgggatacaaatgagctttgttca
gttcatactttcaacctcaacaacagagtttactcagtcgaccttaatggaccgaaatca
ctagttgctgcagcgagtgaccagccatttattagaatcttggatgtgaggtctacttcg
agtgcacatactctcaagggacacaagggcaaaacactctcagtcaagtggcacccatta
aacgagcatctcttggcttctggtgggtacgacggtcaggccaagatttgggatattcga
cggagcgaaaacctattgtgcctgttagacatgcatcatacaaacaaacaggcaaataca
acctttggtttaaaaaaaaccacatcgacatcaatatctgcacctgcttctgcaaaagcg
catctgggacctgttaatgggctttcttgggatgagctgggtacaacattatacacggct
ggtaacgatgacaagatccgagtttgggatatggtagggtcctcttatccaccagtgaac
aaacttatcaactttggacctttgactcgcaacaagtatacgcaaacaatacccatacta
ttgaacccaatgggcgaaaccaatttgcaataccttctatttccatcagagagtggagaa
atcttagtccataggacaatcgatggtaagttggtcaataggttgggcagaaaagggtcc
aaaaatataggcagaacttgctcgatgtgcaatggaggtccaaacactggtagctatatt
tgtggcactgttgatggcgagttgatctgctggcaggtcttttccgactacatcgatctc
tcagaaatttttgaggaaagaaaggaagaggaagaagatgtagaaagattattactaaaa
aagcacactttagcacttaaagccaaaaatttgatgaagtcattggaggtttga
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