KEGG   Lodderomyces elongisporus: PVL30_003062
Entry
PVL30_003062      CDS       T01116                                 
Symbol
RPB5
Name
(RefSeq) DNA-directed RNA polymerases II 24 kDa polypeptide (RNA polymerase II subunit 5)
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
lel  Lodderomyces elongisporus
Pathway
lel03020  RNA polymerase
lel03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:lel00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PVL30_003062 (RPB5)
  09124 Replication and repair
   03420 Nucleotide excision repair
    PVL30_003062 (RPB5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lel03021]
    PVL30_003062 (RPB5)
   03400 DNA repair and recombination proteins [BR:lel03400]
    PVL30_003062 (RPB5)
Transcription machinery [BR:lel03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     PVL30_003062 (RPB5)
  RNA polymerase III system
   RNA polymerase III
     PVL30_003062 (RPB5)
  RNA polymerase I system
   RNA polymerase I
     PVL30_003062 (RPB5)
DNA repair and recombination proteins [BR:lel03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      PVL30_003062 (RPB5)
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N Sof1 AAA_3 SH3_2
Other DBs
NCBI-GeneID: 5232534
NCBI-ProteinID: XP_001525649
UniProt: A5E1U0
LinkDB
Position
3:complement(join(2020570..2021139,2021516..2021590))
AA seq 214 aa
MDDNDRAISRLFRTFKTVKEMVRDRGYYISQEELDMTLEEFRAKVCDSMGYPQRKLMCFQ
ATPTAEQLDKFPEMGSLWVEFCDEPSVGIKTMRNFCIHISEKNFQVGIFIYQNSITPSAN
KLIPTVQPASIETFQETDLIVNITHHELVPKHIKLNREEKKELLERYRLKESQLPRIQRE
DPVARYLGLKRGEVVKIIRRSETSGRYASYRICL
NT seq 645 nt   +upstreamnt  +downstreamnt
atggatgacaacgacagggccatttctcgtcttttcaggacgttcaaaacagtgaaggaa
atggttagggatagaggctactatatatcccaagaggaactcgatatgacattggaagaa
ttccgtgcaaaagtttgtgactcgatgggttacccacaacgtaaactcatgtgtttccaa
gctacacctactgcggagcaattggacaaatttcctgaaatgggttcactttgggttgag
ttttgcgatgaaccttcagttggtatcaagacgatgagaaacttttgtatacatattagt
gaaaagaattttcaagttggtattttcatttatcaaaatagcattacaccaagtgcgaac
aagttgatccccactgtgcagccagctagtattgagacattccaagagacggatttgatt
gtcaatatcacgcatcacgaattagtacccaaacatatcaaattgaatagagaggagaag
aaggaattgttggagagatataggttgaaagagtcgcagttgccaagaatacagagggag
gacccagtggctagatacttggggttgaagagaggcgaggttgttaaaatcattagaaga
tcggaaacgtcaggacgatatgcatcatacagaatttgtttgtaa

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