Lodderomyces elongisporus: PVL30_003159
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Entry
PVL30_003159 CDS
T01116
Symbol
RAD3
Name
(RefSeq) TFIIH/NER complex ATP-dependent 5'-3' DNA helicase subunit
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
lel
Lodderomyces elongisporus
Pathway
lel03022
Basal transcription factors
lel03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PVL30_003159 (RAD3)
09124 Replication and repair
03420 Nucleotide excision repair
PVL30_003159 (RAD3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lel03021
]
PVL30_003159 (RAD3)
03036 Chromosome and associated proteins [BR:
lel03036
]
PVL30_003159 (RAD3)
03400 DNA repair and recombination proteins [BR:
lel03400
]
PVL30_003159 (RAD3)
Enzymes [BR:
lel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PVL30_003159 (RAD3)
Transcription machinery [BR:
lel03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PVL30_003159 (RAD3)
Chromosome and associated proteins [BR:
lel03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
PVL30_003159 (RAD3)
DNA repair and recombination proteins [BR:
lel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PVL30_003159 (RAD3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
DEAD
ResIII
PspAA
nSTAND3
YtxC
Motif
Other DBs
NCBI-GeneID:
5233258
NCBI-ProteinID:
XP_001525753
UniProt:
A5DY73
LinkDB
All DBs
Position
4:complement(4551..6959)
Genome browser
AA seq
802 aa
AA seq
DB search
MKFYIDDLPVLFPYPKIYPEQYAYMSDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ
MHYPEHRKIVYCSRTMSEIEKALIELHKLMEFRASALGYVEDFRGLGLTSRKNLCLNPLI
SRERKGNVVDEMCRRVTNGQLKEKIERGVVTEDMQERDPEKYSLCSFHENLNELDQHDLI
PEGVYSFDALIKYCKQIGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIADRVSRELSKDSI
IIFDEAHNIDNVCIEALSLDLTEDALKRATRGANKLADAVDEMKQQDSEKLQNEYEQLVE
GLRQAEVAREEELFMSNPILPQDLLDEAIPGNIRKGEHFVAFLKRFIEYLKTRMKVLHVI
SETPTSFLQHLKELTYIDRKPLRFCSERLSLLVKTLELSEIEDFNALKDIATFATLVSTY
DTGFQLILEPFETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKM
LNFQTVIQESYAMTLSRRAFLPLIVTKGSDQLALSSRFEIRNDPSVVRNYGSLLIEFSKI
TPDGMVVFFPSYLYMESIISMWQTMGVLDEVWKHKLILVETPDAQETSLALETYRKACSN
GRGAVLLSVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFMRDHLQIKEND
FLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFARKKSQLPKWIAQALNDSDTNLSTDM
ALATGKKFLRSLAQPTNPKDQEGVSVWNLAQLEDYQKQFNKVQVSEEKQNEINGFVDENI
NGTPKETVDDFMDIDDEDLDLL
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgaagttttacatcgatgatctaccggttctatttccctatcccaaaatataccccgag
cagtatgcatacatgagtgacatcaaaaagaccctcgatgtgggtggaaactgtatattg
gagatgccgtcggggacgggaaagactgtttccttgctttcgctaacagtggcataccag
atgcattacccagagcacagaaagattgtttattgttcacgtaccatgtctgagattgag
aaggcattgattgagttgcacaagttgatggagtttcgagcaagcgcgttgggatacgtt
gaagatttccgcggattggggttgacaagtaggaagaacttgtgcttgaacccattgata
tcgcgggagaggaaggggaatgttgttgatgaaatgtgtcgacgcgtgacgaatggtcag
ttgaaggaaaagattgagcgaggagtcgtgactgaggatatgcaagaaagagatcctgaa
aaatactccttgtgctcattccacgagaatttgaatgaactcgaccagcatgatttgatc
ccagaaggtgtttattcatttgacgcgttgatcaagtattgtaagcagataggaacgtgt
ccgtatttcacggtgcgtagaatgattccgttctgcaacatcatcatctactcatatcat
tatttgttggatcccaagattgccgatagagtttcgcgcgagttgtccaaggatagcatt
attatttttgacgaggcgcacaatattgataatgtttgtatagaggcgttgtcgttggac
ttgacagaggatgctctaaagcgggctacgagaggtgctaacaagctagcagatgcggtt
gatgagatgaagcagcaagatagtgaaaaacttcaaaatgaatatgaacagttggtagaa
gggttgcggcaagccgaggtggcacgcgaagaggagctctttatgtcgaatcccatccta
ccgcaagatttacttgatgaggccattccaggtaacattcggaaaggtgaacattttgta
gcatttttgaaacggtttattgagtatctaaagactagaatgaaggtgttgcatgtgatt
agtgagacacctacgagtttcttgcagcacttgaaagaacttacatatatcgatcggaag
cccttgcggttctgctcggagaggctttcgttgttggtaaagacgttggaattgtcagag
attgaggatttcaacgcgttaaaggatattgcaacatttgcaactttggtgtctacttat
gatactgggtttcaacttatcttggagccatttgaaactgaaggtagtactgtgcccaac
ccgatcctccatttcacttgtttggatgcgtcaattgcaatcaagccggtatttgatagg
ttctcttcggtgatcattacctcgggaaccatttcacctttggatatgtaccccaagatg
ttgaatttccaaaccgttattcaagaatcgtatgcaatgacgttgtcgagacgtgcgttt
ttaccattgattgttacgaaaggtagtgatcaattggcgctttcgtctagatttgaaatt
agaaacgatccttcagttgttcggaactatggctctttattaattgagttttcaaagatc
acacccgatggcatggttgtgtttttcccatcatatttgtatatggagtcgattatatcc
atgtggcagacaatgggagtattggacgaagtgtggaagcacaaacttattcttgttgag
actcctgatgcgcaagaaacgtctttggcgttggagacgtatagaaaagcttgttcgaat
ggaagaggtgcagtattattatcagttgcgcgtggaaaagtttccgaaggtattgatttt
gaccatcattacgggagaacagtattgatgattggtattcctttccaatatacggagtcg
aggatcttgaaagctaggttggagtttatgagagaccatttgcagatcaaggagaatgac
tttttatcgttcgacgcgatgcgacacgctgcgcagtgcttgggacgggttttgcgtggt
aaggatgattacgggatcatggtgttggcggatagaaggtttgcaaggaaaaaatcacag
cttccgaaatggattgcgcaggcgcttaacgattcggataccaatttgtcgacggatatg
gcgttggcaacggggaagaaattcttgcgcagtcttgcacagcccacgaaccccaaggat
caagaaggtgtttctgtgtggaatcttgcgcagttggaggactatcagaaacagtttaac
aaggtgcaagtgtcggaggagaagcagaatgagattaatgggtttgtggatgagaacatt
aacggcacgccaaaggagactgttgatgatttcatggatatagatgatgaggatctagat
ttgctttag
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