Lodderomyces elongisporus: PVL30_003489
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Entry
PVL30_003489 CDS
T01116
Symbol
SNF5
Name
(RefSeq) SWI/SNF chromatin-remodeling complex subunit
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
lel
Lodderomyces elongisporus
Pathway
lel03082
ATP-dependent chromatin remodeling
lel03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
PVL30_003489 (SNF5)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
PVL30_003489 (SNF5)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lel01009
]
PVL30_003489 (SNF5)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lel03021
]
PVL30_003489 (SNF5)
03036 Chromosome and associated proteins [BR:
lel03036
]
PVL30_003489 (SNF5)
Protein phosphatases and associated proteins [BR:
lel01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
PVL30_003489 (SNF5)
Transcription machinery [BR:
lel03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
PVL30_003489 (SNF5)
SWI/SNF complex
PVL30_003489 (SNF5)
Chromosome and associated proteins [BR:
lel03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
PVL30_003489 (SNF5)
PBAF complex
PVL30_003489 (SNF5)
SWI/SNF complex
PVL30_003489 (SNF5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
Motif
Other DBs
NCBI-GeneID:
5233054
NCBI-ProteinID:
XP_001526083
UniProt:
A5DZ54
LinkDB
All DBs
Position
4:complement(895057..897816)
Genome browser
AA seq
919 aa
AA seq
DB search
MPLEGISPVHQQPQQQQQQHQQQSQGGPPQARTGGLPPITPQFLASLNPQQMQVLKNLPQ
FQEAMRQYRQRQELMQNPQNKRIMNNIQQQMSPQSASDGVGVGTGFGVGGHTEQMLGSQQ
FQDLSMQSMSNEQVIRLQQQQAQQPQAHIQNLQNTQNIAQQSPPNFQPQYPHDLPYKRNV
QNQMSPQSVSMQNLGIPGGLPIKKVPSRVPSVPGPKGIGGTRASPQLYGEVTNGVNAGVG
EVESVPNMMPNGIPTGGPPGVPPGVSGTLPTGLPNVIPAGVPNGLPNNLPNGVLNGVPNG
VPNGVPNGVPNGVPNGVPNGVPNGVPNGLSNGGMASNPGNFATPGGIPVQHPSQTQLDQA
GQYPSSQQAGSNINVPVSAPSLSAQEFLSKVPMKPLSSFHEWSDKLTKENKEVPLDTKVY
ETMIQKDAMFLAEHSKQSFENKMELESLSKDLQQYNMVKQLRMNSIQLSAKNQLNNSIWG
EGYQGYGNGVTNTGTKLLLPPRDYTDRMINERLMRQDKQSKNYVPIRLEFDQERDQFKLR
DTFLWDLNEEVLSVEDFTTQLLEDYKFIPKVHYHTILSSIKEQIADYQQKPIKTTGELRI
PIKIDIIINNTQLTDQFEWDILNNGDSDPEEFATMMSDELYLPGEFATVIAHSIREQSQM
YLKALNLAGYAFDGTPVTDDSVRNHLLPALRLVSKDYQVVDDFFSILRNPSNVSDYCPQL
IKLTEMEVERMDKELERESRRKRRHNYNEDAQALFGSGGAFGSGSGGFEGRGGSSGVGGG
GGGGGGGLGIGLGLGLGSGGGGLGGGNSFSSSNDRGSVGSRGLVSSRRAAAHTGRGTISL
DLSDVPRTFRTPAPSSILPGGVDLGVPDVYEYNEVVVKRSQVKNPDYRPPTPEPVANDLV
TYHHDPIEGTFNVTIKLLD
NT seq
2760 nt
NT seq
+upstream
nt +downstream
nt
atgcctttagagggcattctgccggttcaccaacagcctcaacagcaacagcaacagcat
caacaacaatcacaaggaggtcctccgcaagctagaactgggggacttccaccaattact
ccacaatttttagcttcgctcaaccctcaacaaatgcaagttcttaagaaccttccacag
tttcaagaagcaatgagacagtataggcaacgccaggagcttatgcaaaaccctcaaaac
aagaggattatgaataatattcaacaacagatgctgccacaaagtgcatcagatggtgtg
ggagtaggaacagggtttggtgttggaggacacactgagcagatgcttggttctcagcaa
ttccaagatcttctgatgcagctgatgagcaatgagcaggtaattagacttcagcagcaa
caagctcaacaaccacaagctcacattcaaaatttacaaaatactcaaaatatcgcacaa
caatctccacccaactttcaaccacaatatcctcatgacttaccatataagagaaatgtt
caaaaccaaatgtcgccgcaatccgtgagtatgcagaacttgggtattccaggcggacta
ccaatcaagaaggtacctagtcgagtgccttctgtaccaggcccaaagggtattggtggc
actagggcaagtcctcaattatatggagaagtcaccaatggagtaaatgcaggtgtaggt
gaagttgaaagtgtgcccaacatgatgcccaatggtatacccactggcgggccacctggt
gtacctcccggtgtgtctggcacattaccaaccggtttgcccaatgtgattcctgcaggc
gtccccaatggtttacctaataatttacctaatggcgtattaaatggcgttcccaatggt
gtacccaatggtgtacccaatggtgtacccaatggtgtacccaatggtgttcccaatggt
gttcccaatggtgtaccaaacggtttactgaatgggggtatggcgagcaacccaggaaac
tttgcaacacccgggggtattccggtgcaacaccctctgcaaactcagcttgatcaagcc
ggtcaatacccatcctctcaacaggcaggttcaaatatcaatgtcccagtcagtgctcca
tctttaagcgcgcaagagtttttgagtaaagttccaatgaaaccactttcaagctttcat
gaatggtcagataagttgaccaaagaaaacaaggaggttccccttgatacaaaagtgtat
gaaactatgatacaaaaggatgcgatgtttttggctgaacattccaaacaatcatttgag
aacaaaatggaattggaaagcttgtcgaaagacttgcaacagtacaacatggtaaagcaa
ttacgaatgaactcaattcaattgagtgcaaaaaatcaattgaataatagtatatggggc
gaagggtaccaagggtatggcaatggagtaactaatactggtactaaattattgttacct
ccacgcgattatactgatcgaatgattaatgaacggttaatgcgtcaagacaaacaactg
aagaactatgtgccgatacgacttgagtttgaccaagaacgagaccagtttaaattgcgt
gatacatttctctgggatttaaatgaagaggttttgagtgttgaggactttacgacccaa
ttattggaagactacaagtttatccccaaagttcattatcatactatattgagttcgatc
aaggagcagattgcagattaccagcaaaaacctattaaaacgacaggggaattacgaata
ccgattaagattgatattatcatcaacaacactcagttgacggatcagtttgagtgggac
attttgaataatggcgatctggaccccgaggagtttgcaaccatgatgagtgacgagttg
tatttgcctggtgagtttgccacagttattgcccatagtatccgcgaacagagtcagatg
tacttgaaggccttaaatttggctggttacgcttttgatggtactccagttactgatgat
agtgtacgcaaccatcttttacctgcgttgcgtttggtttctaaagactatcaggttgta
gatgatttcttttcgattttgaggaacccttccaatgtttcagattattgtccacaattg
atcaaattgacagaaatggaagtggagagaatggataaagaacttgagagggagagtaga
agaaaacgtagacacaattacaatgaagatgcacaagctttgtttggttctggaggtgct
tttggttcgggtagtggaggttttgaaggtagaggaggtagtagtggcgttggtggcggt
ggcggtggcggtggcggtggtcttggtattggtcttggccttggtcttggcagtggtggt
ggtggtcttggtggtggtaatagtttttcgtcaagtaatgaccgtggaagtgttggttca
aggggacttgtgtcctcgaggcgtgctgctgcacatactggaagaggtactattctgctt
gacttatcagatgttccccgaacatttagaactccagcgccctcgagtatattaccaggt
ggagttgatttgggtgtgcctgatgtttacgagtataatgaggtggttgtcaaaagactg
caggtcaagaatcctgattataggccacctacacctgaacccgtagcgaatgacttggtc
acttatcatcatgatcctatagaaggaacatttaatgtgaccattaagttattagactaa
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