Lodderomyces elongisporus: PVL30_003756
Help
Entry
PVL30_003756 CDS
T01116
Symbol
RAD50
Name
(RefSeq) DNA repair protein rad50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
lel
Lodderomyces elongisporus
Pathway
lel03440
Homologous recombination
lel03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PVL30_003756 (RAD50)
03450 Non-homologous end-joining
PVL30_003756 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lel03032
]
PVL30_003756 (RAD50)
03400 DNA repair and recombination proteins [BR:
lel03400
]
PVL30_003756 (RAD50)
DNA replication proteins [BR:
lel03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
PVL30_003756 (RAD50)
DNA repair and recombination proteins [BR:
lel03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
PVL30_003756 (RAD50)
BRCA1-C complex
PVL30_003756 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
PVL30_003756 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_15
SMC_N
Rad50_zn_hook
AAA_21
AAA_29
AAA_22
AAA_13
DUF5805
Motif
Other DBs
NCBI-GeneID:
5233029
NCBI-ProteinID:
XP_001526369
UniProt:
A5DZZ0
LinkDB
All DBs
Position
4:complement(1717423..1721358)
Genome browser
AA seq
1311 aa
AA seq
DB search
MSSIYKLSLKGIRAFEPEHDETIQFGFPLTLICGQNGCGKTTIIECLRYATTGNLPPNSK
GGAFVHDPGLSSRVAVHGEVKLAFKNANGKSMITTRSVSATMKKGGAGGGAGGNGGLTFK
TLEGQLAYIEKGQKTAISSKNAEMDAQIPIFLGASPAILDNVIFCHQDDSLWPLSEASVL
KKKFDDIFEASKFTKVIDNLKTIKRDMSVDIKLIEQSVNHLKIDKDRAKKVKDKLAQKTQ
SVDHFTMEISELNIKIEKKEKEADQLFASNQEFQKTLSDYENLLMKKESLEESIEKLKTT
ITILQDTDEELYHKQENFASINTEKSAKIEELQTESFDLEKQLKDKSAISNELIRLDGSL
KAKKAEYESNEKKIKDIIHEHAALMKYLEQDNISVASFKKSVEESLASAKRQQKDFVVES
KAKESIQQSKYQDVCDSILKNEQTCNYLSQEVSSNQQTLLTLKRKLDVIASDENELTVKR
TELEQINQELSTKKKLNEVKSFDSKIIESNEEISKLEFELDEISKRLVTGNKQSELKSKL
KYLEDSMKQKDDAVQDILKKLNDRYKKIVGSDVDIDVAEVKFNEKLVQLTLDMEEQQRKV
FSLESELESEKRSREAIFQSRDENNKKTKQLKSELLEVIQEDEINDYETVVENLEDDYRN
VMEDVNTAEVTKKYGDSAMEVAKKNNCCLLCKRTFNKDELERFIEDLRRGFDEKKTQEVK
MSANEIGKELEETKKIGLKIVTYRECLSLKATFETQIESADAKINHVNELLKQEKSKHDL
LKSNVDSANLLKKPLSDTTRLNSESSDLAIQIDDLNDELESYGSGAATLTVAQLQAQQQE
VNKKIKGLRVDLNECTEQKFKAQRDLQKLEGKIKDTKLVISNLERSLAEVHNVKKSIKDI
ETAIEQAEMKIAGIQKKLEELRKEKQMEFEKLSEIQRLNSLEEESLQRNTEQISKIYSDF
INLKNAIEEYETNDRAELEKNTVEMENTIQEIECIKQKMNHLSQQIKVLEKEVMDSSRIE
HNIIANIDYRSQIHKLDETDFQINAMDIENAQVKKLEYQEHSRRLRDELSELTSQHAGKI
GEVKQIKDQIEGLKKELETEYKNVNELYHEEWIKLQTNLLVSNDIQNYSKALDNAIMKFH
SIKMEDINRILGDLWSQTYKGSDISTIAIKSDVNLQAKGNRSYNYRVVMVKDNSELDMRG
RCSAGQKVLASILIRLALAECFGANCGMIALDEPTTNLDNENAEALALALNRIIEYRKQQ
SNFQLIVITHDEKFLTHIQGDRFTDHFYRIQRDEKAKSRIYSLPISRIQEY
NT seq
3936 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagtatctacaaactttcccttaaaggtataagagcatttgaaccagaacacgat
gaaacaattcagtttggatttcctttgactttgatttgtggtcaaaatggatgtggtaaa
accacaattatcgagtgtttgagatatgcaacaacagggaatcttcctccaaactccaaa
gggggcgcgtttgttcatgatccaggattaagttcacgcgttgcagttcatggggaagta
aaattggcattcaagaatgcaaatggcaaatccatgatcactacacgcagtgtttccgct
actatgaaaaagggcggagctggtggaggagctggtggaaacgggggactcacattcaag
acccttgaaggacaattggcttatattgaaaagggacaaaagacagcaatatcttcaaaa
aacgcagagatggatgctcagattcccatttttttaggagcttcccctgcaatattagat
aacgtgattttttgccatcaagatgatagtttatggccattgagtgaggcgtcagtattg
aagaagaaatttgatgatatttttgaagcctcgaaattcaccaaagtgattgataacttg
aaaacaataaagagggacatgtcagttgatatcaaactaatcgaacaaagtgtaaatcac
ttgaagatagacaaagaccgagcaaaaaaagtaaaggataaattggcacaaaagacacaa
tcagtagatcatttcaccatggaaattagtgagcttaatatcaagattgaaaagaaagaa
aaagaggctgaccaattatttgcttcaaatcaagaattccaaaagacattgagcgactat
gaaaacttattgatgaaaaaggagtcactcgaggaaagcattgaaaagttaaaaacaaca
atcactatacttcaagatacagatgaagaactttaccacaaacaagaaaattttgcctca
atcaatactgagaaatcagccaaaattgaagagttgcaaacggagagttttgacttggaa
aagcaattgaaagataaatctgccatttcaaatgagttgattagactcgatgggtcatta
aaggcaaaaaaagcagagtacgaatctaatgaaaaaaagattaaggatataattcatgaa
catgctgctttaatgaaatacctagaacaagataatatttctgtagctagtttcaaaaaa
agcgttgaagaaagccttgcctctgccaaaaggcaacaaaaggatttcgttgttgaaagt
aaagcaaaagaatcaatacaacaatccaagtaccaggatgtatgcgactcaatactaaaa
aatgaacaaacttgcaattacctaagtcaagaagtctcgagtaatcaacaaactttattg
actttaaagagaaaattggacgtcattgctagcgatgaaaatgagttgactgtaaaacga
acagaactagaacaaataaatcaagaactcagtacaaagaagaagctaaatgaagtcaaa
agctttgattcaaagattattgaatcaaatgaagaaatctcaaagttggaatttgaactt
gacgaaatttcaaaaagattagttaccggtaacaaacagtctgaactaaagtcgaaactc
aaatatcttgaagattcgatgaaacaaaaagatgacgctgttcaagacattttaaagaag
ctaaacgacagatacaagaagattgttggatcagatgtggatattgatgttgctgaggta
aaatttaatgaaaaacttgtacaacttaccttggatatggaagaacaacaaagaaaagtg
tttagtttagaaagcgaactagaatcggagaaacgttctcgagaagccatttttcaatcc
agggatgaaaataataaaaagactaaacaactcaaactggaactattagaagttattcaa
gaagacgagattaatgattatgagactgtggtagagaatttggaagacgattatcgaaat
gtgatggaagatgttaatactgctgaggttaccaaaaagtatggagactctgcaatggag
gtggcaaagaagaacaattgctgtctcttgtgtaagagaacttttaacaaggatgaattg
gaaaggtttattgaggatttgagaagaggttttgatgagaaaaagactcaagaggtaaaa
atgagtgctaatgagataggtaaagaattggaggaaacgaaaaagatagggctaaaaatt
gtaacttatagagagtgtttgtcactaaaagctacttttgagactcaaattgagtcagcg
gatgctaaaataaaccacgtaaacgaacttttaaagcaagaaaaaagtaaacatgacttg
cttaagtcgaatgtggattctgctaatttactaaagaaacctttatctgatactactaga
ttaaattcagagtcactggaccttgctattcaaatcgacgatttaaatgatgaattggaa
agttatggttctggtgctgcaactctaactgtggcgcagcttcaagcacaacaacaagag
gtgaataaaaaaatcaagggtttaagggtagatttgaacgaatgtacagagcaaaaattt
aaagctcaaagagaccttcaaaaattggagggcaaaatcaaggacacaaagttggtcata
agtaatcttgagcgatcactcgccgaggtccacaatgtaaaaaagtctattaaggacatt
gaaaccgcaatcgagcaagctgaaatgaagattgctggaattcaaaaaaagctcgaagag
ttacgaaaagaaaaacaaatggagtttgagaagttgagcgagattcaaagactaaacagt
ttagaagaagaaagcttacaacgaaatacagagcaaatctccaagatttattcagatttc
ataaacttgaaaaatgcaatagaagagtatgagacaaatgacagggcagaattggagaag
aataccgttgagatggaaaacactattcaagagattgaatgtatcaaacagaaaatgaat
catttgtcccaacagattaaagttcttgaaaaagaagtgatggattcatcaagaatcgaa
cataatataatagctaatattgattatcgtctgcaaattcataaattggatgaaactgat
tttcaaatcaatgctatggatattgaaaatgcacaggtgaaaaaactcgagtatcaagaa
cattcgaggcggttgagggatgagctttccgagctcacttctcaacatgcaggaaagatt
ggagaagtgaaacagatcaaagaccaaattgaaggattaaagaaggagttggagactgag
tacaagaatgtcaacgaactataccacgaggaatggattaagcttcaaacaaatctacta
gtgtcaaacgacatccaaaactattcaaaggctttggacaatgctattatgaagtttcat
agtataaaaatggaggatatcaatagaatcttgggtgatttgtggtctcaaacatataaa
ggatcagatatttctacaatagctattaaaagcgatgttaacttgcaggccaagggtaac
agatcttataattacagagttgtcatggtaaaggataatagcgagttggatatgagggga
agatgttctgctggacaaaaagtgttggcgagtattttgattcggttggcattggcggaa
tgttttggtgcaaattgtggtatgattgctttggatgagccaactacgaatttggataat
gaaaatgcggaagcgttggcattggcattgaatagaataattgagtatagaaaacagcaa
ctgaactttcaactcattgtcattacacatgatgaaaagttcttgactcatattcaaggt
gatcgatttactgaccatttctacaggatccaaagggacgaaaaggcaaaatcaagaatc
tatagtttacctatcagccgtatacaggagtattga
DBGET
integrated database retrieval system
