Lodderomyces elongisporus: PVL30_003936
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Entry
PVL30_003936 CDS
T01116
Symbol
SKI6
Name
(RefSeq) Exosome non-catalytic core component
KO
K11600
exosome complex component RRP41
Organism
lel
Lodderomyces elongisporus
Pathway
lel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVL30_003936 (SKI6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lel03019
]
PVL30_003936 (SKI6)
Messenger RNA biogenesis [BR:
lel03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PVL30_003936 (SKI6)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
PVL30_003936 (SKI6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
INTS7_C
Motif
Other DBs
NCBI-GeneID:
5231564
NCBI-ProteinID:
XP_001524240
UniProt:
A5E3M3
LinkDB
All DBs
Position
5:complement(165091..165825)
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AA seq
244 aa
AA seq
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MSRMELYSPEGLRIDGRRWNELRRFECRINTHPNSSDGSSYVEQGNTKVICTVIGPMEPT
SRAQMNQDRANVEVNLTIANFSTFERKKRSKTEKRLVELRTTLERTFEQSILLHLYPRTN
ITINVQVLNQDGGMLAAVTNSITLALMDAGIAMYDYVSSISCGLHDQSPLLDLNNLEEND
MSCLTIGVIGKSEKLALLMLEDKMPLDNLEKVLGIAIAGSHRIKDLMDMEVRRHGSARAA
KLVK
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgaatggaattgtattcaccggagggattgagaatagacggaagacgatggaat
gagcttcgccgattcgagtgcagaatcaacacacacccaaactcatcggatgggtcatca
tacgttgaacaaggaaacaccaaggtgatatgcacagttattggacccatggaacctaca
agccgagcacaaatgaatcaggatagagccaatgttgaagtcaatcttacgattgccaac
ttttctacttttgaacggaaaaaacggtccaaaaccgagaaaagactagttgaacttcga
actactttggaaagaacctttgagcagctgatattattacacttgtaccctagaactaat
atcactatcaatgttcaagtattgaaccaggatggtggcatgcttgctgcagtgaccaat
tcaataacgttggcgttgatggatgcaggtatagcaatgtacgattacgtgagcagtatt
agttgtggtttacatgatcaatctccattgcttgatttaaacaatttggaagaaaatgat
atgagttgtttgactatcggagttattggaaagagtgagaaacttgcgttgttgatgctt
gaagataagatgcccttggataatttggagaaagtgttgggcattgcaattgctggtagc
cataggattaaggatttgatggatatggaagtgagacgacacggaagtgcgagagcagca
aagttggtgaagtag
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