Lodderomyces elongisporus: PVL30_004027
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Entry
PVL30_004027 CDS
T01116
Symbol
SUB2
Name
(RefSeq) Suppressor of the cold-sensitive snRNP biogenesis mutant brr1-1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
lel
Lodderomyces elongisporus
Pathway
lel03013
Nucleocytoplasmic transport
lel03015
mRNA surveillance pathway
lel03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PVL30_004027 (SUB2)
09122 Translation
03013 Nucleocytoplasmic transport
PVL30_004027 (SUB2)
03015 mRNA surveillance pathway
PVL30_004027 (SUB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lel03019
]
PVL30_004027 (SUB2)
03041 Spliceosome [BR:
lel03041
]
PVL30_004027 (SUB2)
Enzymes [BR:
lel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PVL30_004027 (SUB2)
Messenger RNA biogenesis [BR:
lel03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PVL30_004027 (SUB2)
Spliceosome [BR:
lel03041
]
Complex C
Other components
EJC/TREX
PVL30_004027 (SUB2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
PVL30_004027 (SUB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
5231565
NCBI-ProteinID:
XP_001524332
UniProt:
A5E3W5
LinkDB
All DBs
Position
5:join(392979..393201,393914..394992)
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AA seq
433 aa
AA seq
DB search
MSAENQEELLDYSDSEEIAVPTTTQAGEGESANDKEADKKGSYVGIHATGFRDFLLKPEL
LRAIGDCGFEHPSEVQQVCIPQSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVAGEIST
LVICHTRELAYQIRNEYARFSKYMPDVKTEVFYGGTPVKRDIEKLKNKDTCPHIVVATPG
RLHALVQEKAIRLNNVKSFVIDECDKVLESLDMRRDVQDIFRATPHQKQVMMFSATLSQD
IRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYIKLEEKEKNRKLSDLLDSLEFNQVIIFV
KSTQRANELNKLLCACNFPSIAVHSGLPQEERIERYKSFKEFNKRICVSTDVFGRGIDIE
RINLAINYDLPNEADQYLHRVGRAGRFGTKGLGISFVSTKEDEEVLEKIQSRFDVKITEF
PEEGVDPSTYMNT
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctgaaaaccaagaagaattgttggactattccgactccgaggaaattgcagtc
ccaaccactactcaagcaggtgagggcgagtcagccaacgacaaggaagccgacaaaaag
ggttcatacgttggtatccacgccaccggtttcagagactttttattgaaaccagagtta
ttgagagctattggtgactgtggttttgagcacccttcagaagtccaacaagtttgtatt
ccacaatctattttgggtaccgatgtcttgtgtcaagcaaaatctggtttgggtaaaacc
gccgtttttgtcttgtctactttacagcaattggaccctgttgcaggtgagatctcgact
ttggtcatttgtcacaccagagaattggcatatcaaattagaaacgagtatgccagattc
tccaagtacatgccagatgtcaagacagaagtcttttacggtggtactccagtcaagaga
gatattgagaagttgaagaacaaggacacttgtccacacattgttgttgcaactccaggt
agattgcatgcattggttcaagaaaaagccattagattgaacaatgtcaaatcatttgtt
attgatgagtgtgacaaggttttggagtctctcgacatgagaagagatgtccaggatatt
ttccgtgcaaccccacaccaaaaacaagttatgatgttttcagctaccttgtcacaagac
attcgtccagtttgtaagaaatttatgcaaaacccattggagatttacgttgacgacgaa
gctaaattgactttgcacggtttgcaacaatactacatcaagttggaagaaaaggaaaag
aatagaaaattatccgacttgttagattcattagagtttaatcaagtgattatttttgtc
aagtcgacacaaagagctaacgagttgaacaaattgttatgtgcttgtaacttcccatca
attgccgtccactcaggtttgccacaagaggagagaattgagagatacaagtcctttaag
gagtttaacaagagaatctgtgtctcaaccgatgtctttggtagaggtatcgatattgag
agaatcaacttggctatcaattacgatttgccaaacgaagctgatcagtacttgcataga
gttggtagagctggtagattcggtaccaaaggtttgggtatttcatttgtctcgaccaag
gaagatgaggaagtcttggaaaagattcaaagtagatttgatgtcaagattactgagttc
ccagaggaaggtgtcgacccatcaacctacatgaacacataa
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