Lodderomyces elongisporus: PVL30_004173
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Entry
PVL30_004173 CDS
T01116
Symbol
PAT1
Name
(RefSeq) DNA topoisomerase 2-associated protein pat1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
lel
Lodderomyces elongisporus
Pathway
lel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVL30_004173 (PAT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lel03019
]
PVL30_004173 (PAT1)
Messenger RNA biogenesis [BR:
lel03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PVL30_004173 (PAT1)
mRNA degradation factors
5'-3' decay
Decapping complex
PVL30_004173 (PAT1)
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Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
5231457
NCBI-ProteinID:
XP_001524484
UniProt:
A5E4B7
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Position
5:complement(832497..835091)
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AA seq
864 aa
AA seq
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MSFFGFDPTQPPAGTRNDEAYDFENTYDGLGELEEDDAFNSETFGTSTNEIRKDFEFGHT
DNNTGTGAGYQATPHASHTSTAAAAAAATATPQSTSISYAQAAQSAPVNDDEFMQELWGE
SNAPSKSAGVSTSAKGDSQSSERKVLSLEEIEAQLTAIDQSQMPNFAHQQPGSFPPQGYG
VPGMMPPPPHIPPQHFNGYMMGGFIPPNQFGMPGMPPQPMPPMQPPIPSSQPLPHSQPVP
PPPQQVQQQQQQQQQPLVSIQQENQQPRNAIKANEQNASQQARTKPQKVDLSQFPVLGSK
EATQQQQLAQHQPQAQQPHYQQQQHQQQQQQQQHQNFLRGQENQQFDAHQQSPRHHHQRL
QDLSPEERDKALKRQEKVSRIMRYSGIMNPKDKDFVTRFQLSQIVTEDPYNEDFYAQVYK
VIHPKSANGTQLQAPAQQNNSIAQAYLDHSGHRLGGRYKRADVALQRMQQQVQKAVAVAK
DRPKPNQLSKEGALGKISFASGKKPRQQLEIISKAAEREKENKSGNKGDDANSSSSNNNN
KNNNNGSGSGIGAGDEDVRKYGRKDILGILENIISELMNVESESRTSVDIDTSKLWEAMK
VLEQTSSSGDPESEVNPFVQCLNYNKMLKILMRLFKFLNREQILTIAALIMSNLENLSVI
KNGSYTTYPDKKVPEKVLKLVDAYSLTFSKVLMNAVLEFKFSEIIGLIVILIEHNNVAFV
STTKIGLTILTTLLSRAELIIGEAQISATDLAEWSSCYDELFTALESRIAAIFPPNPIEV
DDGSSRENYIWQFLATLSVGGKLSHQRIIVDELRDEIFGVMKRAREIDPRDMANLYKKQN
LLNNLNMFLVVMGLVADENEIKEL
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgtcattctttggatttgatcctacccagcctccagctgggacgaggaacgatgaagcg
tatgattttgaaaatacctatgacggcttaggagagttagaagaggatgatgcattcaac
tcagaaacttttggaaccagcacgaacgagattagaaaggattttgaatttggtcatacc
gacaataacactggtaccggcgctggatatcaagctactcctcatgcttcccatacttct
actgctgccgctgccgctgctgccactgctactccacaatcgacttcaattagttatgca
caagctgctcaaagtgcaccagttaacgatgacgaatttatgcaagaactttggggagaa
tcaaatgctccaagcaaatctgcaggcgtaagcacaagtgccaaaggagatagccaatcg
tcagaacgaaaagttctttcattggaagagattgaagctcaattaaccgcaattgatcaa
agtcaaatgccaaattttgctcatcaacaacctggtctgtttccaccacaaggctatggt
gttccagggatgatgcctccgcctccccatattccaccacagcatttcaatggatatatg
atgggaggattcattccacctaaccaatttggtatgcctggtatgcctcctcaacctatg
ccaccaatgcagccacctataccatcatctcagcctcttccgcattctcaacctgttcct
cctccaccgcaacaagttcagcaacagcagcaacagcagcaacagccacttgtatccata
cagcaagagaatcaacagccacgaaatgctatcaaagccaatgaacaaaatgcttctcaa
caagctcgaaccaagcctcaaaaagtagacttgtctcaatttcctgttcttggttcgaaa
gaggccactcagcaacagcaacttgcacagcatcagccacaagctcagcaacctcattat
cagcaacagcaacatcaacaacaacaacaacagcaacaacatcaaaattttttgaggggg
caagagaatcagcaattcgatgcacatcaacaatctcctcgtcaccaccatcaacgcctt
caagatctctctcccgaggaaagagataaagctcttaagaggcaagagaaggtatcgaga
atcatgagatactctggtataatgaatccaaaggataaagattttgtcactagattccaa
ttgtctcagattgttactgaagatccatataatgaagacttttacgctcaagtgtacaaa
gttatccaccctaagtctgccaatggtacccagcttcaggcacccgctcagcaaaacaat
tcgattgctcaagcatacttggatcacagtggccatagattgggtggtcgctacaagaga
gccgatgttgcgttgcaaagaatgcagcaacaggtgcaaaaagcggttgcagttgccaaa
gatagacccaaacccaaccaattatctaaagagggtgcgttgggtaagatttcgtttgct
agcggtaaaaagcccagacaacagttggaaattattagtaaagcggccgaaagagagaag
gagaacaagtcgggaaacaaaggtgatgatgctaacagcagcagcagcaacaacaacaac
aagaacaacaacaatggcagcggcagcggcattggtgctggtgacgaagacgtaaggaaa
tacggtagaaaagatattcttggtatccttgaaaatattatttctgaattgatgaatgtc
gaaagtgaatcaagaacactggttgatatcgatacttccaaactttgggaagcaatgaaa
gttttggagcaaacttcttcttctggtgatccagaaagcgaagtcaatccattcgttcaa
tgtttgaactacaacaagatgttgaagatcttgatgagactctttaaattcctcaacaga
gaacaaatcttgaccattgcagcgttgattatgtctaatttggaaaacttgtctgtgatc
aaaaatggatcatacactacttatccagataagaaagttcctgagaaagtactcaagctt
gttgatgcttattcgttaacattttctaaagtgttgatgaatgctgttttggagttcaag
tttagtgaaatcattggccttattgtgattttgattgagcataataatgttgcgtttgtt
tctacaacaaagattggtttaaccatcttgactacattattatctcgagcagagttgatt
atcggagaagcgcaaatttcagctacggacttggcggaatggtcctcatgttatgacgag
ttattcacagcattggaatctagaattgctgctattttcccacctaatccaatcgaagtt
gatgatggatcttctagagagaattatatttggcaattccttgccacgttatcggttgga
ggtaaattgagtcaccagcggattatagttgatgaattgagagatgaaatctttggagtg
atgaagagagcaagagagatcgatcctcgtgatatggcaaatctttacaagaagcaaaac
ttgttgaacaatttgaacatgtttttagtcgttatggggcttgttgccgatgaaaatgaa
attaaagagctctaa
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