Lodderomyces elongisporus: PVL30_004297
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Entry
PVL30_004297 CDS
T01116
Symbol
TFB1
Name
(RefSeq) RNA polymerase II transcription factor B subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
lel
Lodderomyces elongisporus
Pathway
lel03022
Basal transcription factors
lel03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PVL30_004297 (TFB1)
09124 Replication and repair
03420 Nucleotide excision repair
PVL30_004297 (TFB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lel03021
]
PVL30_004297 (TFB1)
03400 DNA repair and recombination proteins [BR:
lel03400
]
PVL30_004297 (TFB1)
Transcription machinery [BR:
lel03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PVL30_004297 (TFB1)
DNA repair and recombination proteins [BR:
lel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PVL30_004297 (TFB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Med29
Motif
Other DBs
NCBI-GeneID:
5231424
NCBI-ProteinID:
XP_001524605
UniProt:
A5E4N8
LinkDB
All DBs
Position
5:1165480..1167879
Genome browser
AA seq
799 aa
AA seq
DB search
METVRGACSKDKVGGMVFIREDITPSMLEWKAVDDDKNNIAIPLNKLVALQATKETVPKM
ILQISYKSDVENEPDKKMKLHFNNRPTMNNIKDALQTIVARSRTRVEGSPSTPMSDAGIG
SPSTLSSTFPGAAAVGKTGGTGLSQSPSGGGSLQPGVSPSTPTPVPSSSSSSSSSSSSAT
GNFSLAQNALSDANLLKNFELQQKLLLEDRNLRNIFTKSVMSFKLSPTIFWSSRINQLRT
FALTISQHRGPYNVLSTIKPVATSDNQVNVNVTRDTINEIFEIYPIIKRAFTDLVPKRFS
EGEFWSRFFNSKLFRRLRGDKIGINSGRGDVVLDKYLYMDEKATPLSDVNKESQKEAGKE
QGKEGKGKEGKGKEGKGKEGKGKEQSKESNKEETSADATTATASQADGNSPKRRKVEAEN
PLLNDNITDDNITVNKTIDLFANEQDNSQKLGNRPDMTMRFDGDLSTIMGNSSGGGPNRF
QGNGRENEMVILMRNMNKLSSKMMSMSSADTSSSSSSSSLPRTKGETTVDGLSAQEVNEY
EEELNLHDLNVVEESHYIKLNINTSASRSPSVGPGEKDAGAEEQLDDKEAQNFIYQQFQQ
VTKGGDEKTEKDDIKTSNYFDLTDTFKGKTEDIEKTSFEVSALLRQNFKTYKLLNKDETY
LKSSYEKVPVNLVPDSLYQEIITYNITIVEFLSHFWKLFLQGKNPQQLKKLFTSLKNCAN
SLREFKTRATAQLEAIEIVAKNEKLRDKILKDFNSCLEPVELSLQTALTKYTAAAAAATS
ATSATSVSSVAPVPATEGA
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atggaaacagtacgaggcgcatgttcaaaagacaaagttggagggatggtgttcattcgc
gaagacatcacgccctccatgcttgaatggaaagcagtagacgatgacaagaacaatatc
gccatcccattaaacaaattagtggcacttcaagccacgaaggaaactgtgccaaagatg
attttacagatcagttacaagtccgatgtcgaaaacgagccagataaaaagatgaaacta
cactttaataaccgacctacaatgaataatatcaaagacgctttacaaacaattgttgca
cgatcaagaacacgtgttgaaggatcaccatcaactccaatgtcagacgctggtattgga
tctccttctactttgtcttccacttttccaggtgctgctgccgtaggaaaaacaggagga
acagggttaagtcaatcaccatctggtggtggtagtcttcaacctggagtatctccatca
acaccaactccagtaccttcatcttcatcgtcatcgtcatcgtcatcgtcatcagcaacc
ggcaacttttcacttgcgcaaaacgcattatctgatgctaatctactcaaaaattttgag
ttacagcaaaagctcttactagaggacagaaacttgcgaaacatttttaccaaatcagtc
atgagctttaaattatccccgacaatattctggtcgagtcgaatcaaccaattgcgcaca
tttgcattgaccatatcccagcatagaggaccatacaatgtgctaagcacaatcaagcct
gtggctacatcggataatcaagtgaatgtcaatgtgacgcgtgacaccatcaatgaaatt
tttgaaatctacccaatcatcaaaagagcatttaccgacttggtgcctaaaaggtttctg
gaaggtgaattctggtcgcgctttttcaattcgaaattgtttagacgattgcgtggtgac
aagattggtattaatagtggacgtggtgatgtagtgttggataagtacttgtacatggat
gaaaaagcgaccccgcttagtgatgtcaacaaagaaagtcaaaaagaagcaggcaaagag
caaggcaaagaaggtaaaggcaaagaaggtaaaggcaaagaaggtaaaggcaaagaaggt
aaaggcaaagagcaaagcaaggaaagtaataaagaggaaacatcagcggatgcaactact
gccacagcttctcaagcagatggtaattcacctaagcgacggaaagttgaagctgaaaat
ccactactcaatgataacataacagacgacaatattactgttaacaagactatagacttg
tttgcaaatgagcaagataattcacaaaaattgggcaaccgtcccgatatgaccatgaga
tttgatggtgatctactgacaattatgggcaatagcagcggtggtggccccaacagattt
caaggaaacggtagggaaaatgaaatggttatattgatgagaaatatgaataaattatct
tcgaaaatgatgagcatgagttctgctgatacatcatcatcatcttcttcttcttctttg
ccgcggacaaaaggcgagactactgttgatggattatcagctcaagaagtaaatgaatat
gaagaagagttgaacttgcatgacttgaacgtagttgaggagtcgcattatataaaacta
aacatcaacacaagcgcatctcggagtccaagtgttggtcccggtgaaaaagatgctggt
gctgaagaacagcttgacgacaaagaagcacaaaactttatttatcaacaatttcaacag
gtgacgaaaggcggtgatgaaaaaaccgaaaaagatgacataaagacatcaaactatttt
gatttgacagataccttcaagggaaaaacagaagacattgagaaaacatcttttgaggtg
tctgcgcttcttcgacaaaattttaaaacctataaacttctcaacaaagatgaaacatat
ttaaaatcatcatatgagaaagtgcccgttaatttagtgcccgactccttataccaggag
attattacatataatatcactattgttgagtttttgtcgcatttttggaaactatttctt
caaggtaaaaacccgcagcaattgaagaagttgttcaccagcttgaaaaattgtgcaaac
ctgttgagggagttcaaaactcgagcaacggctcaattagaggcaattgagattgtagca
aagaatgaaaagctaagggataagattttaaaagatttcaattcctgtttggaaccagta
gagctcagtttacaaactgcattaaccaagtacactgctgctgctgctgctgctacttcg
gctacttcggctacttctgtttcttctgttgcacctgttcccgccaccgaaggagcctaa
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