Lodderomyces elongisporus: PVL30_004406
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Entry
PVL30_004406 CDS
T01116
Symbol
RPC1
Name
(RefSeq) DNA-directed RNA polymerase III subunit
KO
K03018
DNA-directed RNA polymerase III subunit RPC1 [EC:
2.7.7.6
]
Organism
lel
Lodderomyces elongisporus
Pathway
lel03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PVL30_004406 (RPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lel03021
]
PVL30_004406 (RPC1)
Enzymes [BR:
lel01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PVL30_004406 (RPC1)
Transcription machinery [BR:
lel03021
]
Eukaryotic type
RNA polymerase III system
RNA polymerase III
Core subunits
PVL30_004406 (RPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF2786
Motif
Other DBs
NCBI-GeneID:
5230286
NCBI-ProteinID:
XP_001523103
UniProt:
A5E7R0
LinkDB
All DBs
Position
5:complement(1470447..1474799)
Genome browser
AA seq
1450 aa
AA seq
DB search
MGKDVVIARTPKCISGLEFSALSADDIVAQSEVEVQTRDLYDLEKGRTAKAGGALDPRMG
TSSNAQECSTCHGNLASCQGHFGHIKLALPVFHVGYFKAIITVLQCICKNCAAVLLDEKN
KRQFLNELRKPDIDNLKRMKILKKVSDQCKKQRRCLKCNHVNGVVKKAASGAGPAALKIV
HDTFRWIGKKDTPEKEEWDKEIEQVFMRNPELEKYAKRITEDFNPLKTLNLFKQITPSDC
ELFGMDPLRGGRPEMYIWRYLPAPPVCIRPSVMMDAQSNEDDLTVKLTEIVWTSSMIKAG
IAKGISMNNLMEQWDYLQLSVAMYINSDSANPALIPSVGGGGGGGSKSSKPIRGFCQRLK
GKQGRFRGNLSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKRKLQQ
LIINGPDHHPGANYVQKQNEPGKRNLRFGDRHKLARSLQVGDLVERHIEDGDVVLFNRQP
SLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEARAEAINLMGVK
NNLLTPKSGEPIIAATQDFITGSYLISHKDTFLDRASLVQLLSMMSDADIHFDIPPPAIF
KPVMLWTGKQVFSLLIKPNKQSKVIINLNAKNKTCHPAPKGFPPEMSTNDGYVVIRGSQI
LSGLMDKSTLGDGKKDSVFYVILRDYGPHEAAAAMNRMAKLCARYLGNRGFSIGINDVTP
ATELRQKKELMVEQAYLKCDQLIDLFNRGKLETQPGCNEEETLEAKIGGLLSKVREEVGN
ECIRELDSLNAPLIMATCGSKGSIVNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNS
KTPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSAQ
YDDTVRNSSNGIVQFTYGGDGLDPYDMEGDAKPVNFIRQWDHAYNLTFSANDKSLLPYQI
MDVVEQTLRPREEALKTGDEEGKTEDQLVDQKDAQREFYRSVRDFMAQKAERLARLREER
GLKPYFTFDKQSSDQDEMVLDEDASKVNAIDQLMKISKKTVKIFLTQCLYKYSRAKVEAG
TAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKTISTPIINAVLV
NEDDEIAARVAKGRIEKTSLKDVSIYIEDVYKDNLAFLSIKVDLDSIEKLQLELDISNIA
EAICKAPKLKISQSDVSVMGKDRILVACRVTESKTESLKSGEDQRNNLFFRMQSLKRVLP
DICIKGLPNIFRAVINIKDDNKKELLVEGYGLKDVMNTEGIVGTKTTTNHVLEVNEILGI
EAARSSIIREIDYTMSNYGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLAS
FEKTTDHLFDAAFYMKRDKIEGVSECIILGQTMAIGTGAFKLVKSSNFSDKVLRRKQTLF
ESCCQVPVAA
NT seq
4353 nt
NT seq
+upstream
nt +downstream
nt
atggggaaggatgtggtaattgcaagaaccccgaaatgcatcagtgggttagaattcagc
gccctttcagcagatgatatagtagcgcaatcggaagtggaggtgcaaaccagagacctt
tacgatttggagaaaggtagaacagccaaagccgggggtgctttggatccacgaatgggt
acatcatcaaatgcacaagaatgttctacttgtcatgggaaccttgcctcgtgccagggc
catttcggtcatattaagctagcattgcctgtttttcacgttggatacttcaaggccatc
atcacagttttgcagtgtatatgtaagaactgtgctgcggtacttttggatgaaaaaaat
aaacgtcaatttctaaatgaactacgaaaaccagatatcgataatttgaaaagaatgaag
attttgaaaaaagtttctgatcaatgtaaaaagcaaagaagatgcttgaaatgtaatcat
gttaatggagtggtgaagaaagcagcaagtggtgcaggtccagcagcactcaagattgtt
cacgatacattcaggtggattggaaagaaagatactccggaaaaggaggaatgggacaag
gagatcgagcaggtatttatgcgtaacccagagttggaaaagtatgcaaaaagaattacc
gaggactttaatccattaaagacattgaatttgttcaagcaaataacaccatcggactgt
gagttatttggaatggaccccttgagaggaggaagaccagagatgtacatttggagatac
ttgccagcaccaccagtttgtatcagaccctcagtcatgatggatgcacaatctaacgaa
gatgatttaactgttaagcttactgagattgtctggacctcgtcgatgatcaaggctggt
attgcaaaaggtatctcaatgaacaatttgatggaacaatgggactatttacaattgtcg
gtggcaatgtatatcaattcagattccgccaatccagctcttattccctcggtgggaggt
ggcggcggaggtgggtctaaatcttctaaaccaattagaggcttttgtcaaagattaaag
ggtaaacagggtcgttttagaggaaacttgtcaggtaagagagtggacttttcaggaaga
acggttatttcacccgatccgaatttgaagattgatgaagttgctgtgcccgacagagtg
gcaaaagtcttgacgtaccctgagaaatgtacaagatacaacaagagaaaattgcagcag
cttatcataaatggtcccgatcaccatcctggtgcaaattatgtgcaaaagcaaaatgag
ccaggaaaaagaaacttgcgatttggtgatcgtcacaagctcgcaagaagcttgcaagtg
ggagatttggttgaacgacatatcgaagatggtgatgttgttttgtttaatagacagcca
tcattgcataggttatccatcttatcacattacgcaaagattcgtccatggagaaccttc
cgtttgaacgaatgtgtttgtactccatataatgctgatttcgatggtgatgaaatgaac
ttgcatgttccacaaacggaggaggcaagagcagaggctatcaacttaatgggagtgaag
aacaacttgttaactcccaaatcgggtgagcctattattgccgctacgcaagatttcatt
actggttcatacttgatatcccacaaggatacttttttggatcgtgcctcattagtgcag
ttactaagcatgatgtctgatgccgacattcatttcgacattccgccacctgctattttc
aaaccagttatgttgtggacaggtaaacaagtgttttcgctcttgatcaagccaaataaa
cagagtaaagttattatcaatcttaatgcaaagaacaagacgtgtcatccagcccctaaa
ggttttcctccggaaatgtctacaaatgatggttatgttgtcattagaggctcacaaatc
ctaagcggattgatggacaagtctactcttggtgatggtaagaaggattcagtgttttac
gtgattctacgagattacggtccgcacgaggctgcagcagcaatgaatagaatggccaag
ttgtgtgccagatacttgggaaatagaggtttctctattggtatcaatgatgtgactccc
gcaactgaattgagacagaaaaaggagttgatggttgagcaagcatacctcaagtgtgac
cagctcattgacttatttaatagaggtaaattggaaacacaaccgggttgtaacgaagag
gagactttggaagctaagattggtggtttgctttccaaggtgagagaagaagttggtaat
gaatgtattagagaattggattcgcttaatgcaccattgattatggcaacatgtggttct
aaaggttccattgtgaacgtttctcaaatggtggcagttgttggtcaacagattatatca
ggacatcgtgttcctgatggatttcaagatcgttcattgccacatttcactaagaactca
aagacaccgcaatcgaagggttttgttagaaattctttctttagtggtttatcaccacca
gagtttttgttccatgccatctctggtagagaaggtttggttgacactgctgttaaaact
gcagaaacaggttacatgtcacgaagattgatgaagtctttggaggatttgtctgcacaa
tatgatgacactgtgagaaactcatccaatggtattgttcaattcacatacggtggtgat
ggattagacccgtacgatatggaaggtgatgcaaaaccagtcaatttcattcgacaatgg
gatcatgcatataacttaacattcagtgccaacgacaagtcgttgttaccataccaaatt
atggatgtggtggagcagaccttgagaccacgtgaagaagctttaaagaccggagatgag
gagggaaagactgaagatcaattggttgatcaaaaagatgctcaacgtgaattctatcgc
tcagtgcgagattttatggcacaaaaagcagaacgattggcaaggttgcgagaagagcgt
ggactcaagccttattttacttttgataagcagtcaagcgatcaagacgaaatggtacta
gacgaggatgcttccaaagtcaatgctatcgaccagcttatgaagatctctaaaaaaaca
gttaaaatcttccttactcaatgtctttataagtattcaagagccaaagttgaagccggt
acagcagttggtgcaattggtgcacaatctattggtgaaccaggtacacaaatgacctta
aagactttccattttgccggtgttgcttctatgaatgttaccttaggtgtgccccgtatt
aaggaaattattaatgcctccaaaacgatttctacgccgattattaacgccgtattggtg
aatgaagatgacgaaattgctgcgcgtgtagcaaaaggaagaattgagaagacatcactc
aaggatgtttccatctatattgaggatgtatacaaggataacttggcctttttgtcgatc
aaagttgacttggattcaattgaaaaattgcaattggaattggatatcagcaacattgct
gaggcaatttgcaaggcgccaaaattgaaaatttcgcagagtgatgtctcggtcatgggt
aaggatcgtatcttggttgcgtgccgggttactgaatcaaaaaccgagagtttaaagagt
ggcgaagaccaacgtaacaatctttttttccgtatgcaactgcttaagcgtgtgcttcca
gatatttgtatcaaaggtcttccaaatattttccgtgctgtgatcaacatcaaagatgat
aataagaaggaacttttggttgaagggtatggtttgaaagatgtgatgaatactgaaggt
attgttggaaccaagactactaccaatcacgtgcttgaagtcaatgagattttaggtatc
gaagctgcacgttcgtccattattagagaaattgattatactatgagtaactatggtatg
agtgttgatcctagacatattcagcttttaggtgatgtcatgacatacaaaggtgaagtc
ttgggtatcacacgttttggtttgagtaaaatgagagactctgttttacaattggcatct
ttcgaaaagacaactgatcatttgttcgacgctgccttctacatgaagcgtgataagatt
gaaggtgtttcagaatgtattattttgggacagacgatggcaattggaactggtgcgttt
aaattggtgaaatcatcaaatttcagtgataaggtattgagaagaaaacagactttgttt
gaatcatgttgtcaagttcctgttgctgcctag
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integrated database retrieval system
