Lodderomyces elongisporus: PVL30_004456
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Entry
PVL30_004456 CDS
T01116
Symbol
msh2
Name
(RefSeq) MSH2 protein
KO
K08735
DNA mismatch repair protein MSH2
Organism
lel
Lodderomyces elongisporus
Pathway
lel03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PVL30_004456 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lel03400
]
PVL30_004456 (msh2)
DNA repair and recombination proteins [BR:
lel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
PVL30_004456 (msh2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_14
PRC2_EED_ins
Motif
Other DBs
NCBI-GeneID:
5230234
NCBI-ProteinID:
XP_001523152
UniProt:
A5E7V9
LinkDB
All DBs
Position
5:1617115..1620021
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AA seq
968 aa
AA seq
DB search
MSSNIDIKFSGTGNEKLFIRNLKGKNANDIRFIDHNKEYYSCLDSDAELIADEIYKTRSV
LKTQNGVTYITMSTQVFFNALRLTLLEKQLRVEVYNSRTYELICKGTAGNLDALVSEYGV
DFEFRDCSNPSIAAVKIVGESNKVGVCLIEEDIIRLCEFEDNDLLSNLEGLLVQFGVKEV
VVPNLGEKRLMSVINKISNIVVSTSTQFNTKYIEQDLVKLLAHGDEAGEAGEVGNDAISN
NDNNSSNNNNNNNLEMAFSAKGIKMTEHPISLSCCNALISYLGLLEEQTDLSTSRAYHLE
KYDLSSFMKLDSSTLKALNVFPEFKSTTISSIFELLNKCKTAGGSRLLSQWLKQPLTSVD
EIEERQTLVALLINDSTLRVSIQNALTQIPDIKRLLKKLTIAMMKNGNENKKLEDLVRLY
QIVLVLPELIEALTDKDKIVDKFWLEPIKKSYSALLKFQELIETTVDLKGLHDLHSNFDI
RPEFDASLVEINEKKTEAMDRIKQLHLDAADDLNMDVDKKLKLEMHQIHGYCMRLTRNDS
VVLRNNRKYIEIQTVKAGVYFTTSEFRKQAQVYTHSCEEYNHKQRELIREVISISLTYSS
VFTKLSLDLSHLDVINSFANAALLAPTTYVRPKMIPLDSEKRVVNVKNSRHPLLEVQEDV
EFIPNDISIGSKFFNIITGPNMGGKSTYLKQIATLALMAQVGSFIPADDLREEEEEEEKE
EAAAAAAAKSGENKNGAPTLPVFDAILSRVGAGDSQLKGLSTFMIEMLETSSILATATRN
SLIIIDELGRGTSTYDGFGLAWSISDHLIQVKKCITLFATHFHELNQLAKKYPSEVENLH
VVAYVENQDDITLMYKIEPGVSNKSFGINVAEMVNFPEKIIKMAKRKAEELEDMKGDGNG
NVSGNEDGGNGKKLRGNRDELWLEVENLKKVLKEWRGKDLNAEEAPAELKRLLERNSSAY
VKELINSL
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcaaacattgatatcaagttctccggcaccggtaatgagaagctttttatacga
aacctcaagggcaaaaacgctaatgatatcagattcatcgaccacaacaaggaatactat
agctgtctagactctgacgcagagctcattgccgatgaaatctacaagacgcggtctgta
ctcaagacccagaatggcgttacatacatcaccatgtcaacacaagtgtttttcaatgcc
ttgaggttgacattgttggagaagcaattacgcgtcgaagtctacaattcacgaacatac
gaattgatttgcaaaggtaccgcaggtaatttggatgcattggtactggagtatggagtt
gactttgagttccgcgactgctcaaatccatcaatcgctgcagtgaaaatcgtcggggag
agcaacaaggtgggcgtttgtctcatcgaagaagacatcattagattgtgcgagtttgaa
gataacgacttgttgagtaacttggaaggtttgctcgtgcagtttggtgtaaaggaagtt
gtagtgccaaacttgggagaaaaaagattgatgctggtcattaataaaatctccaacatt
gtggtgagtacgtcaactcagtttaacactaaatatatcgaacaagacttggtaaagtta
ttagcacacggggacgaagcaggagaagcaggtgaagttggcaacgacgcaataagtaac
aatgacaacaacagcagcaacaacaacaacaacaacaacttggaaatggctttttcagca
aaggggataaaaatgacagaacacccaatttctttatcctgttgtaacgcactaatttca
tacttgggtttgcttgaagaacaaacagatttgtcaacaagtagagcctaccaccttgaa
aaatatgatttgctgtcgtttatgaaattggactcgtcaactttgaaagcattaaatgta
ttccccgaattcaagtcaaccaccattagttcaatttttgagttattgaacaagtgtaaa
acagccggtgggtcgagactattatcacaatggttgaaacagccattgactctggttgat
gaaattgaggagagacagacattggtggcgttgcttataaatgactctaccttgagagtc
tcaattcaaaatgcactcacccagatccccgatatcaaaagattactaaagaagcttacg
attgcaatgatgaagaatggcaatgaaaataaaaaattagaagatttggtaaggctatac
caaattgtacttgtgcttccagaactaattgaggctttaactgataaagataagattgtg
gacaaattttggctcgagccaatcaaaaaactgtatagtgcactactcaaatttcaagaa
ctaatcgaaacaacagttgacctaaaaggcttgcatgatcttcattcaaattttgatatc
cgccccgaatttgatgcttcactcgtggaaatcaatgaaaaaaagaccgaggcaatggac
aggattaagcaattgcatttggacgcagcggatgacctcaatatggatgttgataaaaag
ttgaaattggaaatgcatcaaatccatggttattgtatgagactaactagaaatgactcg
gtagtgttgagaaataatcgcaaatatattgaaatccaaacagttaaagcgggtgtgtat
ttcaccaccagtgagtttagaaaacaagcacaagtctacacccactcatgtgaggagtat
aatcacaagcaaagagagttgattcgcgaagtgatttccatctctttaacctacctgtcg
gtgtttacaaaattgagtttagacttgagccatcttgatgtcattaatagttttgccaat
gcagcattattagcacccactacctatgtgagacccaaaatgatcccattggactctgaa
aaaagagttgttaatgtaaaaaattcaagacacccacttttggaggttcaagaagatgtc
gagtttataccaaatgatataagcataggaagcaagtttttcaatatcattactggtccc
aatatgggtggtaaatccacatatttgaaacaaattgctacacttgctttaatggcacaa
gttggatcctttatccctgccgatgatctaagagaagaagaagaagaggaagaaaaagaa
gaagcagcagcagcagcagcagcaaaaagcggggaaaataaaaatggtgctcccacactt
cctgtgtttgacgcaatcttatctcgagttggtgccggtgactctcaactcaaaggtctt
tccacttttatgattgaaatgttggagacatcatcgatcttggccacggcgaccagaaac
tcgcttataattattgatgaattgggtcgaggtacatcaacatatgacgggtttggtctc
gcatggtccatttcagaccatttgatccaagtgaagaaatgtataactctttttgcgaca
catttccatgaacttaatcaacttgctaaaaagtatccgctggaagtggagaatttacat
gttgtggcatatgttgaaaaccaggatgatatcacattgatgtacaagatcgaacccggg
gtatctaataagtcgtttggaatcaacgttgctgaaatggttaatttcccagaaaagatt
ataaaaatggcaaagaggaaagccgaggagttggaggatatgaaaggcgatggaaatgga
aatgtaagcgggaacgaagatggaggcaatggcaagaaattacgtggaaatagagacgag
ttgtggttggaagtcgagaatttgaaaaaagtgttgaaggaatggagaggcaaggatttg
aatgcagaagaagcaccggctgaattgaaacgtttattggagagaaattcgagtgcttat
gttaaggagctaattaatagtttatag
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