Lodderomyces elongisporus: PVL30_004477
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Entry
PVL30_004477 CDS
T01116
Symbol
SYF1
Name
(RefSeq) pre-mRNA-splicing factor syf1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lel
Lodderomyces elongisporus
Pathway
lel03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PVL30_004477 (SYF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lel03019
]
PVL30_004477 (SYF1)
03041 Spliceosome [BR:
lel03041
]
PVL30_004477 (SYF1)
Messenger RNA biogenesis [BR:
lel03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
PVL30_004477 (SYF1)
Spliceosome [BR:
lel03041
]
Complex B
Other components
Prp19-related factors
PVL30_004477 (SYF1)
Complex C
PVL30_004477 (SYF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_CNRKL1_N
HAT_Syf1_M
HAT_PRP39_N
Tricorn_C1
FCH
Motif
Other DBs
NCBI-GeneID:
5230207
NCBI-ProteinID:
XP_001523177
UniProt:
A5E7Y4
LinkDB
All DBs
Position
5:complement(1689181..1691103)
Genome browser
AA seq
640 aa
AA seq
DB search
MLDGLLSDKDISFEEQLAKDNQNSETWHSYYNFKINQDGPFASRIFIINRAVEALPNDKS
LWTLYLELITNQDNLALLSTADQFSIFDQCVDALPKSYGHWQIIIECLLENYIDKVTYIR
RKFNQCLQNLPIEEHGKVWPYFLQFANTIGGVAGIDIYLRYMKYIDPRILKGTVNDHQQN
VADSRNKSLSMNVLEFIDKLKEFGDVKNVARLYSTIVNSNEYVHAKLPKSKIELVFEYLD
FLISSEKNSKTQEKDFNKLINKFLQKYPEQSINLKLKLIQFLKTNNQQNEEKVVKAYSEL
VKECNTIEEFKDVFNEYAEYEETRLEKLFAVESKTNSKLLSKSLDEYETLLNSRKLYVND
VQLRQDTNNVDFWFTRIEIYNKQEQLSEKIKTIAEAIKSINPLKIPGNCKHKLSDIWKMY
AQIYSSSGDFRTADLIISKAVQSQFPHPDELADLYIYWSELRLSSDFFREEQAIQVLSDI
MYKEEKEPISYFDSSITVGKRITKSKKLWSFFIDLLESFIDYDNDDDDAGVDSGNREEGS
NEKDSGLMNLRYINQVIEAFEQMIKLKIASAKDMMQYASFLETHKQTDKSLSIYERALLI
FNDSLIRQEIWRIYMTKLKFINNVERVKDIKERFENEQIR
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgttggatggtttgctaagtgataaagatatctcgtttgaagagcaacttgcaaaggat
aatcaaaattctgagacatggcattcatactacaacttcaaaattaatcaagatggacca
tttgcatctcgaatatttattataaacagagctgtcgaggcactacccaatgataaactg
ctatggaccctataccttgaacttatcactaatcaggataatcttgcgcttttatctacg
gcagaccaattctccatctttgaccaatgtgttgatgctttacccaaatcatatggtcat
tggcaaataattattgagtgtctattggagaattatattgataaagtaacttatatacga
cgaaaattcaaccagtgcttgcaaaacttgccaatcgaagagcacggtaaggtctggccg
tatttcttacaatttgcaaatacaattggaggtgtagctggtattgatatatacttgcga
tatatgaaatacattgacccaaggatactcaaaggaacagtaaatgatcatcaacaaaat
gttgctgactcgcgaaataaatcattgtcaatgaatgtgcttgaatttattgataaatta
aaagagtttggcgacgtgaaaaatgttgcaagattgtattcaacaatagtaaactcaaat
gagtacgtccatgcgaaattgcccaaactgaagattgaattagtatttgaatatttggac
tttcttatatcaagcgaaaaaaatagtaaaacacaggaaaaggactttaataaattgatc
aacaaatttttacaaaaatatccagagcaatctataaacttgaaactaaagctaatccag
tttttaaaaacaaacaaccagcaaaatgaggaaaaagtggtgaaagcttattccgagctt
gttaaggagtgcaacacaatagaagagtttaaagatgtgtttaacgaatatgcagaatat
gaggaaacacggcttgaaaaactttttgctgttgagtccaaaaccaactcgaaattgctt
tcgaagctgcttgatgagtatgaaactttgctaaacagtcgaaagctatatgttaatgat
gtgcaactacgacaagataccaataatgtcgatttttggttcacgagaattgagatttat
aataaacaagaacaactaagtgaaaagattaaaactattgctgaagctataaaatctatc
aatccattaaagatccccggcaactgcaaacacaaattatcggacatttggaaaatgtat
gcccagatctattcctcttcgggtgactttagaactgctgatctaattattagcaaagca
gttcagtcacaattcccgcatccggatgaacttgctgatttgtacatatattggagtgag
ctcagattgagtagtgattttttcagagaagagcaagcgatacaagtattgagcgatata
atgtacaaagaagagaaggaaccaattagttatttcgattcgtcgataacggttgggaaa
cgaattacaaagtcaaaaaagttgtggagcttttttattgatttacttgaatcgtttatt
gattacgataatgatgatgatgatgctggcgttgatagtggaaatagagaagaaggtagc
aatgaaaaagacagtggtttgatgaatttacgatacattaatcaagtaatcgaagctttt
gaacaaatgattaaactcaaaattgcttcagcaaaggacatgatgcaatatgctctgttt
ttggagactcataaacaaacagacaagtcgctaagcatatatgagcgtgcgttgttgatt
ttcaacgacagcttgataaggcaggagatttggaggatctatatgacaaagttgaaattc
atcaacaatgtagagcgagtaaaggatataaaagaaaggtttgagaatgaacaaattcga
tga
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