Lodderomyces elongisporus: PVL30_004563
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Entry
PVL30_004563 CDS
T01116
Symbol
TFB3
Name
(RefSeq) TFIIH/NER complex subunit
KO
K10842
CDK-activating kinase assembly factor MAT1
Organism
lel
Lodderomyces elongisporus
Pathway
lel03022
Basal transcription factors
lel03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PVL30_004563 (TFB3)
09124 Replication and repair
03420 Nucleotide excision repair
PVL30_004563 (TFB3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lel03021
]
PVL30_004563 (TFB3)
03400 DNA repair and recombination proteins [BR:
lel03400
]
PVL30_004563 (TFB3)
Transcription machinery [BR:
lel03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PVL30_004563 (TFB3)
DNA repair and recombination proteins [BR:
lel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PVL30_004563 (TFB3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MAT1
zf-C3HC4_5
zf-C3HC4
zf-RING_2
Tea_helical
zf-C3HC4_2
zf-RING_5
TRAF3_RING
zf-RING_UBOX
zf-RING_16
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
5231967
NCBI-ProteinID:
XP_060975572
LinkDB
All DBs
Position
6:join(194963..194981,195078..196135)
Genome browser
AA seq
358 aa
AA seq
DB search
MLQVNEDQLKDMCPICKTDKYLSPNMKFLVNPECYHKICESCVDRIFSLGPAPCPYPKCG
KILRKNKFKQQIFEDLVIEKEIDIRRRVGAIYNKTEEDFSDLKEFNSYLENIEEIVFKLS
NGVDVEKTEEELSKYEEEHRLEILEKNMRESQKNADLAKYQDAMEQLKQEKLRIQKKMEQ
EDLEFKRLQQQELLEKMTNSSMSSDELIKLQQERLNKRDIQRKKQLQNINSQLEQRFNVT
NPLSKPVADNSKATPFTPFNGDRDLKRKYSLLSIPTSVDEYMHIENNSKDSYYDPYVFDL
AKRKEYLGAGWRLTNVFERALDEAFCGLGCNIEAEKKKEGRAKEKEKRKEKESNLLMV
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgttgcaagtaaacgaagatcaactcaaggatatgtgtccgatatgtaagacggacaag
tatctttcaccaaacatgaagtttcttgttaatccggaatgttaccacaaaatatgcgaa
tcttgtgtggaccgaatattctctttgggaccagctccatgtccgtacccgaaatgcggc
aagattcttcgaaagaacaaattcaagcaacagatctttgaagatttggtgattgaaaag
gagattgatatacggcgaagagttggggcaatatataacaagactgaagaggatttctct
gatttgaaggagtttaatagttatttggaaaacattgaagaaattgtgtttaaactaagc
aacggggtcgatgttgaaaagacagaagaggaattaagcaagtacgaagaggaacatagg
ttggaaattttagaaaagaatatgcgagagtcgcaaaagaatgctgacttggccaagtac
caggatgcaatggagcaattgaagcaagagaaattgaggattcagaaaaagatggaacaa
gaagatttagagttcaagaggttgcagcaacaggagttgttggaaaagatgacgaatagt
tcaatgagcagtgacgagttgattaaactccagcaagaacgactaaacaaacgtgacata
caacgtaagaaacaattgcagaatataaatagccagcttgaacaacggtttaacgttacc
aatccactcagcaagccagttgctgataacctgaaagctacaccatttacgccatttaat
ggagatagggacttgaagaggaaatacagcttattgagtattcctacatcagttgacgag
tatatgcacatcgagaacaattcgaaagacagctattatgatccatacgtgtttgatttg
gccaagaggaaagagtatttgggagcaggctggagattaaccaacgtgtttgaacgagct
cttgacgaagcattctgtggcttgggatgcaacattgaagcagagaaaaagaaggaagga
agagctaaggaaaaagaaaaaagaaaagaaaaggaaagcaacttgttaatggtataa
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