Lodderomyces elongisporus: PVL30_004648
Help
Entry
PVL30_004648 CDS
T01116
Symbol
SPB4
Name
(RefSeq) ATP-dependent rRNA helicase spb4
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
lel
Lodderomyces elongisporus
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lel03009
]
PVL30_004648 (SPB4)
Enzymes [BR:
lel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PVL30_004648 (SPB4)
Ribosome biogenesis [BR:
lel03009
]
Eukaryotic type
Pre-60S particles
Helicases
PVL30_004648 (SPB4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF4217
ResIII
Pet20
Pyocin_S
CMS1
Motif
Other DBs
NCBI-GeneID:
5232190
NCBI-ProteinID:
XP_001524793
UniProt:
A5E2I8
LinkDB
All DBs
Position
6:complement(459034..460947)
Genome browser
AA seq
637 aa
AA seq
DB search
MQTNKGSLLWENLRVDLEPWLKDAIRSLNYPTMTPVQASTIPLLSGNKDVIVEAVTGSGK
TLAFAIPVLQKVSKRLYQVPEGEEKPEPVKRGHMLAIVMAPTRELAKQIQMVFDKVLELL
PEEDSYEPRIKTQLLVGFLGNVREDLDSYQENRPQILIATPGRLLDFMSLQIVKTSSLEI
VILDEADKLLDMSFETDVIKILKMLPKQRRTGLFSATISAAGDTIFRTGMNNPVKLQVKT
KNFLGEQNNAPTSLQLSYMMIEPEHKLTTMLQMLRDNQFKKAIVYFPTCTSVKHFYQMLS
KLCKSSANDIDISALSFFSLHGQLTTKSRLNTLEKFTEGNDESKKYILMATDVAARGIDI
PDVDLVIQIDPPTDPSVFLHRCGRTGRANKVGRAIVMLNNDTQEEDYVGFMEVKSVFMTK
IDPPEDKDNHSFHNKFQKKLRKYMLEDRARHELAVKSYVGFVRYYSKHIASSIFRLASLD
YIAIAKMYGLLRLPKMPESRYIENEKMPEDGWLGEVVDMDTYAYLDKSAEKARLENLEKD
KLAKAENAKRRKELKVKNEAWSSKTEKRETKSERKEKMKRKREAIEKQLEAEQERGGLDE
EEVKEDWKDLVRKNKKKQKSNGGGGGGGVLQGSFDDL
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacaaataaagggtcgcttttatgggagaatttacgtgtcgatttagagccttgg
ctcaaagatgccattcgttctttaaactacccaactatgacaccagtccaagcgtcaaca
attccgttattgagtgggaataaagatgtcattgtggaagcagtaacgggatcaggaaag
acacttgcatttgccattcctgtacttcaaaaagtatcaaaaagattatatcaagtacca
gagggcgaagaaaaaccagagcctgtcaagagaggtcacatgcttgctattgttatggct
cctacaagagagcttgcgaagcagatccaaatggtttttgacaaagttcttgaactcttg
ccagaagaagacagctatgaaccaaggataaagacccaattactagttggctttttgggt
aatgtgagagaagatctcgattcctaccaggaaaaccgtccgcaaatcctaattgcaacg
ccaggacgtttactagactttatgtcattgcaaatagtaaaaacctcgtcattggagatt
gtaatcttggatgaggcagataaattgctcgatatgtcttttgaaactgatgttatcaag
attttgaaaatgttaccaaaacaacgacgaacaggacttttttcagctaccatatcagct
gcaggtgataccatttttagaactggaatgaataaccctgttaagttgcaagtcaagacc
aaaaactttcttggagagcaaaacaatgctcctacatcgttgcagttgtcctatatgatg
attgaaccagaacataagttgactacaatgttgcagatgttgagagacaaccagtttaaa
aaggcaattgtttatttcccaacttgtacctcggtaaaacatttctatcaaatgttatcg
aaattgtgtaaatccagtgcaaacgatattgatatctctgctttactgtttttttcgctt
catggtcaattaacaacaaagtcacggttaaacacgttggagaaattcaccgaaggtaat
gatgaaagtaagaaatatatcttgatggcaacagatgttgccgccagaggtatcgatatt
cccgatgtggatttagtaattcaaatcgatccacccacggaccctagtgtatttttacat
aggtgtggtcgaacaggaagagcaaataaagttggtagagcaattgtcatgttgaacaat
gatacccaagaggaagattacgttgggttcatggaggtgaagagcgtctttatgacgaaa
attgatccacccgaagataaggataaccacagttttcataataaattccagaagaagttg
cgaaaatacatgcttgaagatcgagcacgtcatgaacttgcagtaaaatcgtatgttggg
tttgttcgatattactcaaagcacattgcaagtctgattttccgtttggcatctcttgac
tatattgccattgccaagatgtacgggcttttacgtttacccaagatgccagagtcccga
tatattgagaatgagaagatgcctgaagacggttggcttggcgaggttgttgacatggat
acttatgcatacttggacaagtctgctgaaaaggcaagattggagaatttggaaaaggat
aaattggccaaagccgagaatgcaaagaggcgaaaagagttgaaggtgaagaatgaagca
tggtctagtaagacagagaagagagagacaaagctggagagaaaggaaaagatgaaaagg
aaaagagaggcgattgaaaaacaattggaggcagaacaagagcgtggcggtttggatgaa
gaggaggtgaaggaagattggaaggatttggtgaggaagaataagaagaagcagaagagc
aatgggggaggtggaggtggaggagttttacaggggtcatttgatgacttatag
DBGET
integrated database retrieval system
