Lodderomyces elongisporus: PVL30_004742
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Entry
PVL30_004742 CDS
T01116
Symbol
RFC3
Name
(RefSeq) Subunit of heteropentameric Replication factor C (RF-C)
KO
K10756
replication factor C subunit 3/5
Organism
lel
Lodderomyces elongisporus
Pathway
lel03030
DNA replication
lel03410
Base excision repair
lel03420
Nucleotide excision repair
lel03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PVL30_004742 (RFC3)
03410 Base excision repair
PVL30_004742 (RFC3)
03420 Nucleotide excision repair
PVL30_004742 (RFC3)
03430 Mismatch repair
PVL30_004742 (RFC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lel03032
]
PVL30_004742 (RFC3)
03036 Chromosome and associated proteins [BR:
lel03036
]
PVL30_004742 (RFC3)
03400 DNA repair and recombination proteins [BR:
lel03400
]
PVL30_004742 (RFC3)
DNA replication proteins [BR:
lel03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
PVL30_004742 (RFC3)
DNA Replication Termination Factors
ELG1-RFC complex
PVL30_004742 (RFC3)
Chromosome and associated proteins [BR:
lel03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
PVL30_004742 (RFC3)
DNA repair and recombination proteins [BR:
lel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
PVL30_004742 (RFC3)
Check point factors
HRAD17(Rad24)-RFC complex
PVL30_004742 (RFC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_lid_RFC1
Rad17
AAA_assoc_2
RCF1-5-like_lid
RuvB_N
AAA_11
ResIII
AAA_22
AAA_16
AAA_14
AAA_24
AAA_30
AAA_5
DUF815
DEAD
SLFN-g3_helicase
AAA_7
bpMoxR
AAA_28
AAA_19
Viral_helicase1
Mg_chelatase
DNAX_ATPase_lid
RNA_helicase
nSTAND3
AAA_18
nSTAND6
AAA_3
SbcC_Walker_B
Motif
Other DBs
NCBI-GeneID:
5232187
NCBI-ProteinID:
XP_060975581
LinkDB
All DBs
Position
6:join(684459..684490,684625..685597)
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AA seq
334 aa
AA seq
DB search
MSDKTKQNLPWVEKYRPENLEEVYGQGDIVNTVRRFVETGKLPHLLFYGPPGTGKTSTIV
ALAREIYGPNYKNMVLELNASDDRGIDVVRNQIKSFASTRQIFTSASSPQFKLIILDEAD
AMTSVAQNSLRRIIEKFTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEEAIRSRINN
VIIKEKVDITPDALNALLHLSQGDMRRSLNVLQACKAAVNDDETIDIDMIYNCVGAPHPQ
DIEACLDSILKDDWTTAYSTLTKYKTVNGLALVDLITGFIEILNKYELKPENRVYYLKGL
SDIEYGISKGGNDRIQSSAIIGVIKQAMELEKSN
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgtcggataagaccaaacaaaacttgccatgggttgaaaagtatcgtcctgaaaatttg
gaagaagtttatggccagggggatattgtcaatacagttcgaaggtttgtcgagactggt
aaattacctcatttactattctatggacctcccggtactggtaagacatctacgattgtt
gcgcttgcacgggaaatctatggtccaaactataagaatatggttttagaattgaatgca
tcggatgatagaggtattgatgttgttcgaaaccaaatcaagagttttgcaagtacaaga
cagattttcacttcggcctcgtcgcctcagtttaagcttattatattggatgaagccgat
gcaatgacatcagtggctcaaaactcgttgcgtcgtattattgagaaattcaccaagaat
tgtcgattctgtattttggccaattactcacacaaacttaatccagctttgatctcgaga
tgtacgaggtttaggtttcatccaattgatgaagaagctatacgaagtaggatcaataat
gtgatcattaaggaaaaagttgatattacacctgatgcgttgaatgcgttattgcatctt
tcacaaggagacatgagaaggagtttgaatgtgttgcaagcatgcaaggctgctgttaac
gatgatgagacaattgatatcgatatgatttacaattgtgttggtgcgccgcacccacag
gatattgaggcatgtcttgattctattttgaaagatgattggacaacagcgtacctgaca
ttgaccaagtacaagacggttaatgggttggcattggttgacttgattacagggtttata
gagatattgaacaagtatgagttgaagccggagaatagggtatactatttgaaggggttg
agtgatatcgagtatggaatctcgaaaggtggaaacgataggatccaaagcagcgctata
attggtgtgataaagcaagccatggagcttgaaaagagtaattaa
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