Lodderomyces elongisporus: PVL30_004856
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Entry
PVL30_004856 CDS
T01116
Symbol
SSD1
Name
(RefSeq) Translational repressor
KO
K18748
protein SSD1
Organism
lel
Lodderomyces elongisporus
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lel03019
]
PVL30_004856 (SSD1)
Messenger RNA biogenesis [BR:
lel03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Other mRNA localization factors
PVL30_004856 (SSD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
Dis3l2_C_term
CSD2
Rrp44_CSD1
Rrp44_S1
Motif
Other DBs
NCBI-GeneID:
5231797
NCBI-ProteinID:
XP_001525002
UniProt:
A5E347
LinkDB
All DBs
Position
6:complement(1004414..1008634)
Genome browser
AA seq
1406 aa
AA seq
DB search
MSSNSNNNNSSKDNNPYDQGRAPFNGDNITGFPERVSSKKGKNLHVAHRRSPSELTTLMV
EQYNLQRQLDQVQAQQKQILEQQQQQQQQQQQQQHGGRHQTYQYPQQQPQTAYNDDLYQS
SPSYGNRGSHSRNSSINAHRRTGSTGGTAHGHTRRHSLALNEAIAAADQQRTTRLSSSPT
AQSAQTVGSTGDGGDRVPAFKFPPDAQDAHTSFSTTTTTATTPASPSVPYVGHNRARSSV
TSQHPQQQQQQQQQQQQQQQQQPFKFPNQPPANDSLLPPAPNFSVTQSPERGGGGGSHNR
RSSHYRTASRNADGINQNWRSQQQSPQQPLQTNQLHPMASHHQRQSSTLEPPGGNGGSGF
VPGHRPRHSSYGGNSSISSISHFFPSSGGNGGQGGQGGSLGGPNGQNSGGNNGRKSLFAP
YLPQSSLPELINEGRLVTGTLRVNKKNRSDAYVSTDGLLDADIFICGSKDRNRALEGDLV
AVELLIVDEVWESKKEKEEKKRRKDHNTRPLNDDIHNDATSAPTIGTSTTSPNASGSNDN
NDKDDESSLGRRGSLKQRPTMKKNDDVEVEGQSLLLVEEEEINDDVKPLYAGHVVAVVDR
IPGQLFAGTLGLLRPAQAAQAARDRKSGNEPSVQTPKAPKIVWFKPTDKKVPLIAIPTEQ
APRDFVENHEKYADQLFVASIKRWPITSLHPFGTLVNRLGKVESSETEIDSILRDNNFLC
DEYPEENEFDTEIEEANKIGNGNKNIENDNEKDNENDSKVATQQTANYELPLAEPEFSKA
EASQSRVEYSNDYIIAFSQTGDFVDHSLHVKRISNTKIELGFHVCDIAYYVKPGSFLDRK
SKKRSSSVFLPQRAVHLYPKQVNEAISFRENEKNLAISVVFEIDTTNFEVEDLFIHESVI
VPKQIVSYQDFNKILSNKPVESISSATSDYIKTFSLIAKEFRRHRLVNRDLGTSPNLTLL
NQLDDEKVALSLNVFDDSLALDIISEISYKVNAAIAAKIQVGLGNKAFLRRQALPTLQKM
ETFVRKATNLGFKIDTTNAATLQNSLLKIEDPVKRQCVEILLYKCMSRGKYYVAGKQDPD
TYGHYYLNLPLYTHFSAPLRRYADLIVHRQLKAVLSKEQEEKDVDSLKAIADYCNFKKDC
AANAQEQAIHLLLSQTINDISESAGQVLCMGTVLQVYESSFDVFIPEFGVEKRVHGDQLP
LAKAEFDKSNRILELYWEKGVDSATYVPPDEQSSMSYRNSIKNKYRTSSAEAAKIQNKSV
LEKSSITTESLSEKLRKMNLDPPVLRVPSVKAKQYNDGDAVSASSLKGEVLTKSMPASPT
HAHIPHNARTNSSSIIADSSDIQGRGQNKNASAGLAPYLQDIETRREGDSNIQVIRELTE
VPVLLRAEIGMTLPCLTVRVLNPFMQ
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atgagtagcaacagcaacaacaacaacagtagcaaggataacaacccatatgatcaggga
cgagctccattcaatggggataatatcactggttttccagaacgggtctccagcaaaaaa
ggaaagaatttgcacgttgcgcacagaagatcaccttccgaattgactactcttatggtt
gagcaatataacttacaacgtcagttggaccaagttcaggctcaacaaaagcagatatta
gagcaacaacaacaacagcaacagcaacaacagcaacaacaacacgggggacgtcaccag
acctatcaatacccacaacagcaaccacaaactgcttataatgatgacctataccagtca
ctgcctagctacggaaaccgcggatcacactctagaaactcatcaatcaacgcacataga
agaacagggtccacgggaggcactgctcatggccatacaagaagacattctttggcttta
aatgaggcaattgctgctgccgaccaacaaagaactacaagattaagttcgagtcctacg
gcacaactggcacaaacagtgggactgactggagatggtggagatagagttcccgctttc
aaattcccacccgatgcacaagacgcacacactctgttttctacgactaccacaaccgct
actacgccagcatctccatcagtaccttatgttggtcacaatcgtgcacggtcatcagtc
acctcacaacacccacaacaacaacaacaacaacaacaacaacagcaacaacagcagcag
caacaaccctttaaatttcctaaccaacctcctgcaaacgatagcttattaccaccagca
ccaaatttcagtgttactcaatctcccgaacgtggtggcgggggaggtagccacaataga
aggtcgtcgcattacagaaccgcgtcacgtaatgcagatggtataaatcaaaactggagg
tctcaacaacaatcaccacaacagcctttacaaacaaatcaattacacccaatggcaagt
caccatcaaagacaatcatcaactttagaaccacctggtggaaatgggggaagcggattt
gtgcctggccatagaccgagacacagctcttatggaggcaactcctccatctcgtccatt
tcacacttttttccttcatcaggtggtaatggcggccaaggaggacaaggcggaagtctt
ggtggaccaaatggtcaaaattccggaggtaataatggtcgtaagtcattgtttgcacct
tatttgccccaatcttctttgccagaattgatcaatgaaggtcgcttggttactggtacc
ttgcgagtcaataaaaaaaatagatcagatgcgtacgtttccaccgatggtttgttagat
gcagatattttcatttgcggttcaaaggaccggaatagagcattggaaggagacttggtt
gcggttgagttgttgattgtggatgaagtgtgggaatcaaagaaggagaaggaagaaaaa
aagagaagaaaagaccacaataccagaccattgaatgatgatattcacaacgatgctact
tctgctccaacgattgggactagcaccaccagcccaaacgctagtggcagcaatgataac
aacgacaaggatgacgagtcgtcacttggaagaagaggctcgcttaaacaaagacctaca
atgaagaagaacgacgatgttgaagttgaaggtcaatcattgttgttagttgaagaagaa
gaaatcaacgatgatgttaaaccactatatgcaggtcatgttgtggcagttgtggatcgt
attcctggtcaattgtttgccggtacattgggattattaagaccagcacaagctgcacaa
gccgctagagaccgcaagtctgggaacgagccttcagtgcaaacgccaaaggcacccaaa
attgtatggttcaaaccaacggataagaaggtgcctcttattgctattccaacagagcaa
gctcctcgtgactttgtagagaatcatgaaaaatatgcggatcaattatttgttgcttcc
atcaagagatggccgattacttcattacacccatttggtactttggtcaatagattgggt
aaagttgagagctcagagactgagattgattcgattttgagggacaataatttcctttgc
gacgagtaccccgaagaaaacgaatttgatactgaaattgaagaagccaacaagatagga
aatggaaataagaatattgaaaatgacaatgagaaagacaatgaaaatgacagtaaagtg
gcaacacaacaaactgccaattatgagttgcctttggctgaaccggaattttccaaggct
gaggctagtcaaagtagagttgagtactcgaacgactatataattgcattctcacaaact
ggtgattttgtcgaccattcattgcacgtgaagcgtatttccaacaccaagattgaactt
ggttttcatgtttgcgatatcgcatattatgtcaagccaggttcgtttttggatcgtaaa
tcgaaaaagagatcttcttcagtgtttttaccacaaagagcagtacacttgtatccaaag
caagttaacgaggcaatctcatttcgcgagaatgaaaaaaaccttgcgatttcggttgta
ttcgagattgatacaacaaatttcgaagttgaagacttgttcatccacgagtctgttatt
gtgcccaaacaaattgttagctaccaagactttaacaaaattttgagcaataaacctgtc
gaatccatttcttcagcaactagcgactatatcaagactttcagcttgattgccaaagag
ttccgtcgtcatcgtttggtaaatagagacttgggaacttcacccaatttgacattgttg
aaccaattggatgacgaaaaagttgcattgagcttgaatgtatttgatgatagtttggca
ctcgatataatctccgagattagctacaaggtgaatgcggcaattgcggcaaaaatacag
gttgggttgggcaacaaggcatttttgcgtcgccaagcattaccaacattgcaaaagatg
gagacatttgtaagaaaagccacaaatttgggattcaagattgataccaccaatgcagca
actttacaaaactcgttattgaagatagaggatccagttaaaagacagtgtgtggagatt
ttactctacaagtgtatgtctagaggaaaatactatgttgctggaaaacaggatccagat
acttatggccactactatttgaatcttccattgtatacgcatttttcagcgcctttaaga
cgctatgccgatttgattgttcataggcaattgaaagctgtgctttcaaaagagcaagaa
gaaaaagacgttgactctttaaaggcaattgcagattattgtaatttcaaaaaagattgt
gctgcaaatgctcaagaacaggctatacacttgttactttcgcaaacgattaatgatatt
agtgaaagtgctggacaagtgttgtgcatgggaactgttttgcaagtttatgagtcttct
tttgatgtattcatccctgagtttggtgtagaaaaaagggtacacggagatcagttgcct
ttggcgaaagccgaatttgataaactgaataggatattggaattatactgggagaagggt
gttgactctgcaacatatgttccaccagatgagcaatcgtcaatgtcgtacagaaactca
atcaagaacaagtataggacatcttcggccgaggcagctaaaatacagaacaagtctgta
ttggagaaaagtagtataactacggagtcactaagtgaaaaattgaggaaaatgaattta
gatccgccagttctaagagtcccatcagttaaagcaaaacaatacaatgatggtgatgct
gtttccgcatcatcactaaaaggagaagtgcttacaaaatcgatgcctgcatcaccaacg
catgcacacattcctcacaatgctcgaacaaactcatcttcaatcattgctgattctagt
gatattcaaggtcgtggccaaaataaaaatgcttctgccggtcttgctccatacttacag
gacatagagactagacgcgagggtgactcaaacattcaagttattagagagttgaccgaa
gttccagttttactcagagcagaaataggaatgaccttaccctgtttgactgttcgtgtg
ttgaacccatttatgcagtga
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integrated database retrieval system
