Lodderomyces elongisporus: PVL30_004963
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Entry
PVL30_004963 CDS
T01116
Symbol
utp13
Name
(RefSeq) U3 small nucleolar RNA-associated protein 13
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
lel
Lodderomyces elongisporus
Pathway
lel03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
PVL30_004963 (utp13)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lel03009
]
PVL30_004963 (utp13)
Ribosome biogenesis [BR:
lel03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
PVL30_004963 (utp13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Utp13
EIF3I
Beta-prop_EML_2
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_Vps41
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_DCAF4
WD40_RFWD3
NBCH_WD40
Beta-prop_HPS5
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_WDR75_2nd
WD_LRWD1
RMC1_N
Beta-prop_Nup120_160
Beta-prop_IP5PC_F
KNTC1_N
Beta-prop_RIG_1st
NOL11_N
Motif
Other DBs
NCBI-GeneID:
5232113
NCBI-ProteinID:
XP_060975620
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Position
6:join(1289594..1289597,1289637..1291984)
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AA seq
783 aa
AA seq
DB search
MKPVYIGSASAAINRADGQYMATPQNEDVIITDLDTNEVYYTVLGEEDEVITSLCMTPDG
RYLAVCSQSQQLRIIDVENKQTQKTYRMSAPVYMSASDSSSSLFAFGGSDGVVTVWNIEG
GFASHSLKGHGTTICALTFNGEPHEQDWRLASADIMGTVKIWDLEKKKCSHTIKEHASAV
RGLAFDDEYEYFLTAGRDSVAIIYSTKNFKPINTFPINEQIEASGFIRYVNDQQYFYTAG
SENMLRLWEIKTGQLIAKSKQPLKTNEELVIVDAIKLQDQNVYLVVSDQTLIELDLQQED
QRIEADQIFDIPVVRKIAGNQGVVADMRYVGPNHNFVAMATNSPALRIMNLERPFEVSIL
EAHKDIINALDASADGKWIATASKDNEARLWSWNEETQEFEPFATFQGHAGSVTAICLNK
STETPNFIITGSNDLTVKKWKIPKVKGETVKHSVYTRRAHDKDINSIDISPNDEFFATAS
YDKLGKVWSTESGETIGVLKGHRRGLWDVNFYKYDKLLATSSGDKTVKVWSLNDYACKKT
FEGHTNAVHRAKFFNSTTPQLISSGADGLVKIWDYKSDETVKTLDNHVDRIWALAVKDEE
GDEFITADAVGKFTMWKDNTAEEVRLRELQEKNKVEQEQSLSNFMKNQDWSNAFLLALTL
NHSMRLYHVIKSCIEANVDEDSPIGSRELESTICQLNNDQLITLFKKIRDWNVNFKFFEI
SQSLLNVILHSFGIDKLIEIPGVMKIVESIIPYNERHYSRLDDLIEETYVLDYTVEQMNR
LLA
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgaagcctgtctatattggttcggccagtgcagcgattaacagggcagatgggcaatac
atggcaacaccgcaaaatgaagatgtcatcattacggatctcgataccaatgaagtttac
tacacagtgcttggagaagaagatgaagtgattacaagtttatgtatgactcctgatgga
cgatatcttgccgtttgctcacaatcgcaacagctacggatcatcgatgttgaaaataaa
cagacacaaaaaacatatagaatgtcagcaccagtttacatgtcggcttccgactcgtca
tctagcttgtttgcatttggtggctccgatggtgttgttaccgtttggaatattgaagga
gggtttgcatcacattcattaaaaggtcacggaacaaccatttgtgcgttaacatttaat
ggcgagccccatgaacaggattggaggttggcctcagcagatattatgggaaccgtaaaa
atctgggacttggaaaaaaagaagtgtagtcataccattaaagaacatgcctcggctgtt
agaggcttggctttcgatgatgaatacgagtatttcttaactgcgggacgagatctggtt
gcgataatttacagcaccaagaattttaagccaatcaataccttccccatcaatgagcaa
atcgaggcaagtggatttatcagatacgtgaatgatcaacaatatttttacaccgctgga
tcggaaaacatgttacgtctttgggagatcaagactggacagttgattgccaaatcgaaa
caaccattaaagacaaatgaggagcttgtcattgttgacgcaatcaaattgcaagatcaa
aatgtttacctcgttgtgagcgatcaaacgttgattgaattggatttgcaacaagaagac
cagaggattgaagctgatcagatatttgacatcccagtggtgagaaagattgcaggtaac
caaggtgttgttgcagatatgagatatgttgggccaaaccataattttgttgccatggct
acaaactctcctgcattgcggataatgaatttagaaagaccatttgaagtgtccattttg
gaagcacacaaggatatcattaatgcattggatgcatctgctgatggaaagtggattgcc
actgcgtcaaaggataacgaagctagactttggtcttggaatgaggaaacacaagaattt
gaaccgtttgccactttccaaggccatgcgggttcggtgacagccatttgcttgaataaa
ctgactgagactccgaactttataatcactggatcaaatgatcttacagtgaagaaatgg
aaaataccaaaagttaaaggcgaaactgttaagcattcggtatacaccagacgtgcacac
gacaaagatattaattctattgatatttctcctaatgatgagtttttcgccactgcttct
tatgataagctaggtaaagtatggagcaccgagtctggtgagaccattggtgtgttgaaa
ggtcacagacgtggtctttgggatgtcaatttctacaaatatgacaagttgctcgcaact
agtagtggagacaaaaccgttaaagtgtggtcactaaacgattatgcatgtaaaaagacc
tttgagggccatacaaatgctgtgcacagagcaaaattcttcaacagtactactccacaa
ttgatttcctccggtgccgatgggttggttaaaatttgggattacaagtctgacgaaacg
gtgaaaacgcttgataaccatgttgacagaatctgggcgttggctgttaaagatgaagaa
ggtgacgagtttatcactgcggatgctgtgggtaagttcaccatgtggaaggataatact
gcagaagaagttcgtttgagagagttgcaagagaaaaataaagttgagcaagagcagagt
ttgagtaatttcatgaagaatcaggattggagcaatgcattccttttggcattgacattg
aaccactcgatgcgtctttaccacgtgattaaatcttgtatcgaagccaatgtcgatgaa
gactcgcctattggatcaagggagcttgaatccacaatctgccagttgaacaatgaccaa
ttaatcacattgtttaaaaagattcgtgactggaatgttaactttaaattttttgaaatt
agtcaaagcttgttgaatgttattttgcacagtttcggtatcgacaagcttattgagatt
ccgggcgttatgaagattgttgagagtataattccatataatgagcgtcactatagtcga
ttggatgatttgattgaggagacatatgtcttggactacactgtggagcaaatgaaccga
ctcctagcataa
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