Lodderomyces elongisporus: PVL30_005107
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Entry
PVL30_005107 CDS
T01116
Name
(RefSeq) uncharacterized protein
KO
K06100
symplekin
Organism
lel
Lodderomyces elongisporus
Pathway
lel03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
PVL30_005107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lel03021
]
PVL30_005107
03019 Messenger RNA biogenesis [BR:
lel03019
]
PVL30_005107
Transcription machinery [BR:
lel03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PVL30_005107
Messenger RNA biogenesis [BR:
lel03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
PVL30_005107
U7-dependent histone pre-mRNA processing factors
PVL30_005107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
5230319
NCBI-ProteinID:
XP_001523355
UniProt:
A5E7J2
LinkDB
All DBs
Position
7:444204..446951
Genome browser
AA seq
915 aa
AA seq
DB search
MADGSTANTDLVISQLEAAKKFTLSQPDQFLNVFKGILPIINSPTQAYPVRQWGVEFMYE
TFIDNNNNNNNNSNNNNSQNNNNNNNNGNGNDNGTSGSIQLKLNEKVDLAIESLDTLLFL
IDLPINLQQQQQHAHQHQQRALHSKIQIQHLDVKTFRHLIDISTIVYKLVFQYVAENDNC
NQIWSKLTELKNSLVNKFQTTYPLEKSDNEEHDLVRNIPTKLDLLNFLMTVIDYQSKTKI
IGDPVDDSGFSLDRVRPDHTLIKYQNMEYESNTLFTLVLRIFQMDIIIPALLTATINHSV
VIIKKKPQLVSALLKAVESYETNSKFQSNYQSVEEFKLSKKYVDRALRIFIGYAKRNGLI
PTPIKSALEMKLNVLSDRGNALRKINILASQNDDTNIRKRKFDGFYNPSKKIKVLDYEHL
YKLGASDELSKFDLSLITQPNVHALMVMNALRKVPVQKLTKGLEIICERFKDAVSKSAAS
NAQLQTTIKSEPGFMDPFTISATANDGLYNKAFKSEIDNKGKGNVGKQNNEVGNTGGKYG
EERVKVKVKGKTENEGKREEVEKEEEEEDDDFDYDDDYDENEFKDEPLFSLPPPQNLSFE
EKKEHLSIIIENFLKLAKNPPEKNGVVSIAQESKNNANTDSTAHENPKFNEQLKEVAIKS
FNNNTWVIILTRLATRGMRTVAKDEENEKEVSVDRGIYVKDKSPDDQSKEELSNMIREAL
FNYFVENIHSRVDVVIEWLNEEWYSEQVFYQNCISEEKGKKEKPDETGNETGNETGNETG
NETGNETGKETGKENEKRADDDKDSSSRVMNVSTPIYDKWANKVLDAMINYLEPSDKKNF
IRLCSDLPSLNEQMLGKIKSLCFDPARSNIGFLALHFLIMYRPPVKTICHKILKELGESD
QEDVREEAKKKLARV
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atggcagacggatcaacggccaatactgatttggtgatcagtcagttggaagctgctaag
aagtttactttatcccaaccagaccaatttcttaatgtattcaaaggaatcttgcccatt
atcaactctcctacccaagcgtatcctgtacgacaatggggtgtcgagtttatgtacgag
acctttatcgataacaacaataacaacaacaacaatagcaacaacaacaacagccagaac
aacaacaacaacaacaacaacggcaacggcaacgataatgggactagtggtagcatccag
ctcaaactcaatgaaaaagtagatcttgctattgaatctctagacaccttgcttttcttg
attgatttgccaataaacttgcaacagcaacaacagcatgcacaccagcaccaacaacgt
gcgcttcacagtaagatacaaatccaacatctcgatgtaaagacttttcgtcatttgatt
gatatctcaactatagtgtataagttggtgtttcaatacgttgctgaaaacgacaattgt
aaccaaatatggagtaaattaacagagttgaaaaactcactagtcaacaagtttcaaaca
acatacccattggagaaatcagataacgaagaacacgatttggtaagaaacattcccacg
aaattggacttgctaaacttcttaatgacagtaattgactaccagtcaaagacaaagatt
attggagacccagtggacgatagcgggttctccctcgatcgagtgcgtccggatcacacg
ttgatcaaataccaaaacatggagtatgaatccaatactttgttcacactagtgttgcgt
attttccaaatggacatcattataccagctcttttaacagcgacaatcaatcacagtgtc
gtaatcatcaaaaagaaacctcaacttgtctctgcattgctcaaggcagtggaaagctat
gaaacaaattctaaattccaatccaattaccaatcagtcgaggaattcaaactatcaaaa
aaatacgtcgatcgagcgttaagaatatttattggatatgcaaaaaggaatggattgatc
ccgactccaataaagagtgcactagaaatgaagctaaatgtgctatcagatcgaggtaac
gctttaaggaaaattaatatccttgctagccaaaacgatgatacaaatattagaaaacgc
aaattcgatggtttttataacccctccaaaaaaatcaaagtattggactacgaacatcta
tataaactaggtgcaagcgatgagttgagcaaattcgatcttagtctaataactcagccc
aatgttcatgcattgatggtgatgaatgcgttgagaaaagtacctgtacagaaactcact
aaaggtttggaaatcatatgcgagcggttcaaggatgctgtatcaaaatcggctgcttcc
aatgctcaacttcagactactattaaatctgagcctggttttatggacccttttacaatt
tccgcaactgcaaacgatggcttatacaacaaggcattcaaaagcgaaattgataacaaa
ggcaaagggaatgttgggaaacaaaacaacgaagtgggaaataccgggggtaagtacgga
gaagaaagagtaaaagtaaaagtaaaaggaaaaacagaaaatgagggaaaaagagaagaa
gtagaaaaagaagaagaagaagaagatgatgattttgattacgatgatgactacgacgag
aatgaatttaaagacgagccactatttagcttgcctccacctcaaaatttgtcttttgaa
gagaagaaagagcatttgtctataatcattgaaaactttttaaagttggctaagaatccg
ccggaaaagaatggcgtggtctcaattgcacaagaactgaaaaacaatgcgaatactgat
tcgactgcacatgaaaaccccaaatttaatgaacagcttaaggaggtggccatcaaatca
ttcaacaataatacgtgggtgattatactcacgaggttggctacacgaggaatgcggaca
gtagcaaaagatgaagagaacgaaaaagaagtgctggtggatcgtggcatttatgtcaaa
gacaagtcacctgatgatcaaagcaaagaagaattgagcaacatgattcgagaggcgttg
ttcaactattttgttgagaatattcactcgagagtagatgtggttattgaatggctaaac
gaggaatggtacagcgagcaggtattttatcaaaattgtattctggaagaaaaaggaaaa
aaggaaaaaccagacgaaactggaaatgaaactggaaatgaaactggaaatgaaactgga
aatgaaactggaaatgaaactggaaaagaaactggaaaagaaaacgaaaaaagagcagat
gatgataaggactcttcttccagagttatgaatgtctccaccccaatatacgacaaatgg
gctaacaaggtattggatgcaatgattaattaccttgaacctagcgataagaaaaatttc
atccgtctatgtagtgatttaccctcattgaatgagcaaatgttgggcaaaatcaaatcg
ttatgctttgacccagctcgttcaaacatcgggttcttggcgttgcatttccttataatg
tacagaccgccagtgaaaaccatttgtcataagatattaaaagagttgggtgagagtgat
caggaggatgtgagagaggaggcaaaaaagaaattagccagggtatag
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