Lodderomyces elongisporus: PVL30_005445
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Entry
PVL30_005445 CDS
T01116
Symbol
TFB4
Name
(RefSeq) RNA polymerase II transcription factor B subunit 4
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
lel
Lodderomyces elongisporus
Pathway
lel03022
Basal transcription factors
lel03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PVL30_005445 (TFB4)
09124 Replication and repair
03420 Nucleotide excision repair
PVL30_005445 (TFB4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lel03021
]
PVL30_005445 (TFB4)
03400 DNA repair and recombination proteins [BR:
lel03400
]
PVL30_005445 (TFB4)
Transcription machinery [BR:
lel03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PVL30_005445 (TFB4)
DNA repair and recombination proteins [BR:
lel03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PVL30_005445 (TFB4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
DUF6487
Motif
Other DBs
NCBI-GeneID:
5231046
NCBI-ProteinID:
XP_001523901
UniProt:
A5E525
LinkDB
All DBs
Position
8:259590..260924
Genome browser
AA seq
444 aa
AA seq
DB search
MDAITDRIFTETSLESTTTNDDPTLLTIVLDVSPLGWYNLRHTTSLENITKSLLVFLNGH
LALNNSNQVAFIASSSTGSKFLYPHLAKSNTEKQTRADRISQGMYRQFKNVNEVVLEELI
RFVNEEAEGAARAEAETEAEVEAETNGREDQGGNANKARSKRQAYHARGSTITGAMSMAL
TYTNRMLTLDQSITTTTASAMSTASLNSSISKSGSDSVGTAGVGVGAGGGAVGGGATSSL
SSAVSGASSSTSSVSMNSRILIVTASDNDNHLNYIPLMNCIFTAQKLKVSIDVAKLGTTD
SSYLQQASDATHGVYLKIEDPRGMIQVLSTAFFIEPNLRPHVIMPTDYQVDYKASCFLTK
KPVDLGYVCSVCLCIMSFVPDDLKCPACSSEFDQGIVQELTRDPQVAVVKKKRKLDKANG
TELLNVKAKSEEKEQEANKEKTND
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggatgcaatcacagatcgtatatttacggagacttcattagaatcgacaacgactaat
gatgatccaacattgctcacaattgttcttgatgtttcaccattgggttggtacaatctt
cgccacaccactagtcttgagaacatcacaaagtcattattagtattccttaatggtcac
ttagctctcaacaattccaaccaagtggcattcatagcaagctcgtctacaggatcgaaa
tttctatatccacatcttgccaagtcaaatactgagaagcagactagagcagatcgcata
tcgcaaggaatgtataggcaatttaaaaatgtcaatgaagtcgtcctcgaagaactcatt
cgttttgttaatgaagaggcagagggagcagcaagagcagaagcagagacagaagcagaa
gtagaagcagagacaaatggaagagaagatcagggaggaaacgcaaacaaagcacgatcg
aaaagacaagcttatcatgctcgagggtcaacgattaccggtgcaatgagcatggctctt
acttacaccaatagaatgctcacgttggatcaaagcatcaccactacaactgcatcagcc
atgtccacggcttcacttaactcatccatatccaaatccggatccgactcagtaggcaca
gccggtgtaggagtcggagcaggaggtggagccgttgggggtggggcaacatcgtcgcta
tcttcggcggtatcaggagcatcaagctccacttcatctgtgtcaatgaattctcgaatc
ttaatagttactgcttccgataacgataaccatttgaattatatacctttgatgaattgt
atattcacagctcagaaattgaaggtttccattgatgtagcaaaattaggtactactgat
tcatcatatcttcagcaagcaagcgacgcaacgcatggtgtttacttgaaaattgaagat
ccaagaggtatgattcaggtcttgtctactgcttttttcattgaaccaaacttgagacct
catgtgattatgccaactgattatcaagtggattacaaggcaagttgcttcttgaccaaa
aaaccagtggatttgggatacgtatgttctgtgtgcttgtgtatcatgagttttgtacct
gacgatttaaagtgtccggcttgttcgagtgaatttgatcaaggaatagttcaagaattg
acgagagatccacaggttgctgttgttaaaaaaaagagaaaattggataaagcaaatggc
accgaattgttgaatgttaaggcaaagtccgaagagaaagagcaagaggcgaataaagaa
aaaaccaatgattag
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