Lodderomyces elongisporus: PVL30_005737
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Entry
PVL30_005737 CDS
T01116
Symbol
POP2
Name
(RefSeq) CCR4-NOT core DEDD RNase subunit
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
lel
Lodderomyces elongisporus
Pathway
lel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PVL30_005737 (POP2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lel03019
]
PVL30_005737 (POP2)
Messenger RNA biogenesis [BR:
lel03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PVL30_005737 (POP2)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
PVL30_005737 (POP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
Hid1
eIF-3_zeta
Motif
Other DBs
NCBI-GeneID:
5231010
NCBI-ProteinID:
XP_060975727
LinkDB
All DBs
Position
8:join(1080308..1080313,1080332..1081687)
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AA seq
453 aa
AA seq
DB search
MNFLQQQQQQQQQQHSQSQQASSSSPQITQLQLQQQIQRQQLLSQQLQQQQQQQQQQIGT
PLAQTVHTANPLLAVLNGGNPQGSNNPGMGSLSSNPVLQQLQLQQLQQQQQQQQQQQQQQ
QQQQLQQQRPSSQQQMAQSFNQSIPIIKEVWAHNLEHEFHNLRKFINDKSCMVFAAIHEE
TPGIVARAIGSFKTNTDYHFQTIRCNSDLLNLIQCSICFTKVKDNVVSNSVIWQFNFAYD
LTKEMYNEEHLAMLSQQSSINFSAHSSHGIKYQEFAELLIDSGLLLDESVNWVSFHAGYD
LGFLISLLMNQGLPVDEPEFYWWCHKFFPNFYDLKYVGNQILSGDEKLNKPSIEYLAEEL
HLLPISPVIRQLFGSNINNNNQLTSTLHAYLSMECFKEILRRANFDLNTLAKFKGHIWGL
GSFMADREENGDAATGPMTPRNTKSGIVNLSRA
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcttgcagcaacagcagcagcaacagcagcaacagcacctgcagtctcaacaa
gcgctgtcgtcgtcaccacagattacacagcttcagttgcaacaacagattcagagacaa
cagttgttgagtcaacaattgcagcaacaacagcagcaacaacaacaacagataggaaca
cctcttgcacaaacagtgcatacagctaatcctttactagcagtattgaatggaggaaac
ccacaaggttcaaacaacccaggtatgggctcacttagctcgaaccccgtattacaacaa
ctacaacttcaacagttgcaacaacagcagcagcaacagcaacaacagcaacagcaacaa
caacaacagcaattgcagcaacagcgaccaagtctgcagcagcaaatggcacaatcattc
aaccagtcgatcccaatcattaaagaagtttgggcacataatttagagcacgagtttcac
aacttgcgtaaattcatcaacgacaaaagctgcatggtttttgcagcgatacacgaagag
actcctggaatagtggcaagggctattgggtcattcaaaacaaacacggattaccatttc
caaactattagatgtaactcggatttgctcaacttgatccagtgcagtatttgttttaca
aaagtgaaggataatgttgtgagcaactcagtcatctggcaattcaatttcgcttatgac
ctcacaaaagaaatgtataatgaagagcacttggccatgctttcgcaacagtcatctatt
aatttttcggcacattcatcgcatggaatcaagtatcaagaatttgcagagttgttgatt
gatagtgggttgcttcttgacgagtctgtgaattgggtctctttccatgccgggtacgat
ttgggctttttaatcagtttattgatgaaccaaggtttacctgtcgatgagcccgaattt
tattggtggtgccacaagtttttccccaacttttacgatttaaagtatgttggaaaccaa
attctttccggtgatgagaaattaaacaagccgtcgatagagtacttggcagaggagtta
catcttttgcccatatcgccggttattcgtcaactatttggatcaaacatcaacaataac
aatcaacttacatctactttacatgcttacctatccatggagtgcttcaaggaaatttta
agacgcgccaatttcgatttaaacacacttgcaaagttcaagggtcatatctggggatta
ggatcctttatggcggaccgcgaagagaatggtgatgctgctactgggcccatgacacct
agaaatacgaaatccggtatagttaatttaagtagagcataa
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