Lysobacter enzymogenes M497-1: LEN_1184
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Entry
LEN_1184 CDS
T04598
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
lem
Lysobacter enzymogenes M497-1
Brite
KEGG Orthology (KO) [BR:
lem00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lem03019
]
LEN_1184 (hrpA)
Enzymes [BR:
lem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LEN_1184 (hrpA)
Messenger RNA biogenesis [BR:
lem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LEN_1184 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
Helicase_C
HA2_C
OB_NTP_bind
DEAD
AAA_19
WHD_HA2
AAA_22
nSTAND3
AAA_23
SRP54
nSTAND_NTPase5
NACHT
AAA_25
Cas3-like_C_2
AAA_30
T2SSE
FtsK_SpoIIIE
PhoH
Motif
Other DBs
NCBI-ProteinID:
BAV96671
UniProt:
A0AAU9AQS8
LinkDB
All DBs
Position
1348839..1352960
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AA seq
1373 aa
AA seq
DB search
MNTSQSKQSKQADASAALRQARRAIDGALSRDRGRLHGLWSRWSGKPADAAAQEAFSKAL
AASLAQRQARAAALPQAPVDPALPIAAEAERIVELIRKHPVVVIAGETGSGKTTQLPKLC
LAAGRGAAGLIGCTQPRRIAARAVARRVAEELNTELGGAVGYQVRFNENVGERTAIKFMT
DGILLAEIQSDRFLSAYDTILIDEAHERSLNIDFLLGYLKQLLKKRPDLKIIVTSATIDT
ERFAAHFDGAPVVSVEGRGYPVNVRYRPLDDAESQGADEANPPRRAAAANAEARNPNAAR
SVNDGIVAACDEITREDPRGDVLIFLSGEREIRDAHQALERRKYRETEVLPLYARLSVRD
QDRVFNPGPKRRIVLATNVAETSLTVPRIRYVVDPGLARVKRYSPRGKLDRLHIEPVSQA
SADQRKGRCGRISEGTCYRLYSQADFESRPQYTDPEIRRAALAGVILRMLSLGLGDIEAF
PFLEPPDSRAIADGWQQLAELGAVDEQRKLTATGRTMARLPVDVKLARMLVAANQHGCLR
ETIAIAAFLGIQDPRERPADQRAAADNAHALFADPRSEFVGILKLWDAYQQAHQELTQSK
LRGWCEKHFLGFLRMREWRELHRQLKLLCDELGWRSREAADAPADEPMDAVAYATLHRAL
IAGLPTQVGFRGDKGLYDGPRGRKYTLFPGSPLAKKPPPWLLSATLLDTERVWSMTNASI
EPDWAIQELSHLLARRHHDPRWSRSQGRVVGSEQISLFGLVLAPKRPIHYGALYPEESRA
IFARDALVTGEINTRAGFLARNLATLAKAREEEAKQRRAGLVVDEEWMAQWYLDRLPPQV
HNAQALDAWYNKLPSNEKTALEWSADDLMIGGESEAARFPPYLQLGQARLAVRYRFEPGA
PDDGMTLAVPLHLLNALDPAQLSWLAPGFVADKAAALIKSLPKALRRNFVPAPDFAKAFY
EAHPKPEADDFAGTLARFLRKLGGVEIAATDFDAGSIEAHLRMNLRLLEYPAGQEGRRGK
GEAKGEPVVLAESRDIDELRARFGERAARAFAARAADGLGQRGLTAFPEQPIPLSVPGAA
GVPAFPALHDDGDSVSLRVHAEREAALRAHPRGVRRLLALAMVEKLKQARKQLPIQPKIG
LLYAAIESAAPRQERDSLLRQAQAGNAAGRAALDRPRDGDRLREDIVDGAVQSLLGEDAE
LVQVRDAAAFELRRDEVARKLFPEAMERLRQAEAILAAVAEVRARLESPLMGWASGNLDD
MRAQLARLTPPGFLRDVPTAALAEYPRYLKALSTRGERALRDPVRDQARMLELKPFVDAL
DAATAAGGGDDAGWQALRWDIEELRVSLFAQELGVRGGVSPKKLAQRLAALRG
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atgaataccagtcaatccaaacagtctaagcaggccgatgcgagcgctgcgttacggcag
gcgcgccgcgccatcgacggcgcgctgagccgcgaccgcggccgcctgcacgggctgtgg
tcgcgctggagcggcaagcccgccgatgcggccgcgcaggaggcgttctccaaggcgctg
gcggcgtcgctggcgcagcgccaggcgcgcgcggcggcgttgccgcaggcgccggtggat
ccggctttgccgatcgcggccgaagccgagcgcatcgtcgagctgatccgcaagcacccg
gtggtggtgatcgccggcgagaccggttcgggcaagaccacccagttgcccaagctgtgc
ctggccgccggccgcggcgccgccggcctgatcggctgcacccagccgcgccgcatcgcc
gcgcgcgcggtggcgcggcgcgtggccgaggaactgaacaccgaactcggcggcgcggtc
ggctatcaggtgcgcttcaacgagaacgtcggcgagcgcaccgcgatcaagttcatgacc
gacggcatcctgctggcggagatccagtccgaccgcttcctgtcggcctacgacaccatc
ctcatcgacgaggcgcacgagcgcagcctcaacatcgatttcctgctgggctatctcaag
cagctgctgaagaagcgcccggacctcaagatcatcgtgacctcggcgaccatcgacacc
gagcgcttcgccgcgcacttcgacggcgcgccggtggtcagcgtggagggccgcggctat
ccggtgaacgtgcgctatcgcccgctggacgatgccgaatcgcaaggcgcggacgaggcc
aacccgccgcgccgcgccgctgcggcgaatgccgaagcgcgcaatccgaacgctgcgcgc
agcgtcaacgacggcatcgtcgccgcctgcgacgagatcactcgcgaggatccgcgcggc
gacgtgctgatcttcctgtccggggagcgcgagatccgcgacgcgcaccaggcgctggag
cggcgcaagtaccgcgagaccgaagtgctgccgctgtacgcgcggctgtcggtgcgcgac
caggaccgggtgttcaaccccggccccaagcgccgcatcgtgctggcgaccaacgtcgcc
gaaacctcgctgacggtgccgcgcatccgctacgtggtcgatccgggcctggcccgggtc
aagcgctacagcccgcgcggcaagctcgaccggttgcacatcgaaccggtcagccaggcc
agcgccgaccagcgcaagggccgctgcggccgcatcagcgaaggcacttgctaccggttg
tacagccaggccgatttcgaatcgcggccgcagtacaccgacccggaaatccgccgcgcc
gcgttggccggcgtgatcctgcgcatgctgtcgctgggcctgggcgatatcgaggcgttc
ccgttcctggagccgcccgacagccgcgccatcgccgacggctggcaacagctggccgaa
ctcggcgcggtcgacgagcagcgcaagctcaccgccaccggccggaccatggcgcgcttg
ccggtggacgtgaagctggcgcgcatgctggtggccgccaaccagcacggctgcctgcgc
gagacgatcgcgatcgccgcgttcctgggcatccaggatccgcgcgagcgtccggccgac
cagcgcgccgccgccgacaacgcgcatgcgctgttcgccgacccgcgctcggagttcgtc
ggcatcctcaaactgtgggacgcctaccagcaggcccaccaggaactcacccagtccaag
ctgcgcggttggtgcgagaagcatttcctcggcttcctgcgcatgcgcgagtggcgcgag
ctgcaccgccagctgaagctgctgtgcgacgaactgggctggcgcagccgcgaggccgcg
gacgcgccggccgacgagccgatggacgcggtcgcctacgccaccttgcaccgcgcgctg
atcgccggcctgccgacccaggtcggtttccgcggcgacaagggcctttacgacggcccg
cgcgggcgcaagtacaccttgttccccggctcgccgctggccaagaagccgccgccgtgg
ctgttgtcggcgaccttgctcgacaccgagcgggtgtggtcgatgaccaatgcctcgatc
gagccggattgggcgatccaggagctgtcgcacctgttggcgcggcgccatcacgacccg
cgctggtcgcgttcgcagggccgcgtggtcggcagcgagcagatcagcctgttcgggctg
gtgctggcgcccaagcggccgattcactacggcgcgctgtacccggaagaaagccgcgcg
atcttcgcacgcgacgcattggtgaccggcgagatcaacacccgcgccgggttcctggcg
cgcaacctcgccacgctggcgaaagcgcgcgaagaggaagccaagcagcgccgcgccggg
ctggtggtggacgaggaatggatggcgcagtggtacctcgaccgcctgccgccgcaagtg
cacaacgcgcaggcgctggacgcctggtacaacaagctgccgtcgaacgagaagaccgcg
ctggaatggagcgccgacgatctgatgatcggcggcgaaagcgaggccgcgcgcttcccg
ccgtacctgcagctcggccaggcccggctggcggtgcgctaccgcttcgagcccggcgcg
cccgacgacggcatgaccctggcggtgccgctgcacctgctcaacgcgctcgacccggcg
cagctgtcgtggctggcgccgggcttcgtcgccgacaaggccgcggcgctgatcaaatcg
ctgcccaaggcgctgcggcgcaatttcgtgccggcgccggacttcgccaaggccttctac
gaagcgcatcccaagcccgaggccgacgatttcgccggcacgttggcgcggttcctgcgc
aagctcggcggggtagagatcgcggcgacggatttcgacgcgggctcgatcgaagcgcat
ctgcgcatgaacctgcgcctgctcgaatacccggcgggccaggaagggcgtcgcggcaag
ggcgaggctaagggcgagccggtcgtgctggccgaatcgcgcgacatcgacgagctgcgc
gcgcgcttcggcgaacgcgccgcgcgcgcgttcgccgcgcgcgccgccgacggcctgggc
cagcgcggcttgaccgcattcccggaacagccgatcccgctgtcggtgcccggcgccgcc
ggcgtgccggcgttcccggcgctacacgacgacggcgacagcgtctcgctgcgcgtgcac
gccgagcgcgaggccgcgctgcgcgcgcacccgcgcggggtgcgccggctgctggcgctg
gcgatggtggaaaagctcaagcaggcgcgcaagcaattgccgatccagcccaagatcggc
ctgctgtacgcggcgatcgaatcggcggcgccgcgccaggagcgcgattcgctgctgcgc
caggcccaggccggcaacgccgccggccgcgccgcgctcgaccgtccgcgcgacggcgac
cgcctgcgcgaggacatcgtcgacggcgcggtgcagtcgctgctcggcgaggacgccgag
ctggtgcaggtgcgcgacgcggccgcgttcgagctgcgtcgcgacgaggtcgcgcgcaag
ctgttccccgaagcgatggagcggctgcgtcaggccgaggcgatcctggccgcggtcgcc
gaggtgcgcgcgcgcctggaatcgccgctgatgggctgggccagcggcaacctcgacgac
atgcgcgcgcagttggcgcggctgaccccgccgggattcctgcgcgacgtgccgaccgcg
gcgctggccgaatacccgcgttacctcaaggcactgtcgacccgcggcgaacgcgccctg
cgcgatccggtgcgcgaccaagcgcgcatgctcgaactcaagcccttcgtcgatgcgttg
gatgcggcgacggcggccggcggcggcgacgacgccggctggcaagccttgcgctgggac
atcgaggaactgcgcgtgtcgctgttcgcgcaggaactgggcgtgcgcggcggggtgtcg
ccgaagaagctggcgcagcggctggcggcgttgcgcggttga
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