Lysobacter enzymogenes M497-1: LEN_1921
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Entry
LEN_1921 CDS
T04598
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
lem
Lysobacter enzymogenes M497-1
Pathway
lem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LEN_1921 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lem03019
]
LEN_1921 (deaD)
03009 Ribosome biogenesis [BR:
lem03009
]
LEN_1921 (deaD)
Enzymes [BR:
lem01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LEN_1921 (deaD)
Messenger RNA biogenesis [BR:
lem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LEN_1921 (deaD)
Ribosome biogenesis [BR:
lem03009
]
Prokaryotic type
rRNA helicases
LEN_1921 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
Cas3-like_C_2
P-loop_SecA
Flavi_DEAD
DUF6702
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
BAV97408
UniProt:
A0AAU9AHV2
LinkDB
All DBs
Position
complement(2267054..2269066)
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AA seq
670 aa
AA seq
DB search
MSADTPTDAPSPKFTDLALSEPLLRALADVGYESPSPIQAATIPPLLQGRDVLGQAQTGT
GKTAAFALPILANIDPAQARPQALVLAPTRELAIQVAEAFQKYATHLPGFHVLPIYGGQS
YYPQLQALKRGVQVVVGTPGRVIDHLERGSLDLSQLRCLVLDEADEMLRMGFIDDVENVL
KKTPESRQVALFSATMPTQIKRIAQTYLKDPVEIAIKSTTTTSANIRQRYWSVSGVHKLD
ALTRILEAETFDAMIVFSRTKLGTEELAEKLMARGISAAAINGDVQQQQREKTIQNLKDG
KIDVLVATDVAARGLDVDRISHVLNYDIPYDTESYVHRIGRTGRAGRKGEAILFVTPRER
GMLRAIERATRQPIEPMELPSVETVNEQRVSRFLGRISEALESDDLGLFRDLVERYEREK
NVPAVEIAAALAKLVQGENPLLLTPPPAVPKYAREERDGPREHRGQATRKFIERDNASNS
GAHRRDDNRREAPRFEPRPPREDRPANRHEDRQYTPPGAARPPVNRAEAFFDDDAPAPRA
PRSERAPAREGDVGMETFRIEVGHSHGVQPGNIVGAIANEADLESRYIGRIDIRDEYTLV
DLPEGMPRELMEHLKKVRVAGQPLRIQRAGPGDAEGGRGGRGAGRPPSGPRGPKPHGGGP
RKPFKPRGPR
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccgacacccccaccgacgccccctcccccaagttcaccgacctcgccctgtcc
gagccgctgctgcgcgcgctggccgacgtcggctacgaatcgccttcgccgatccaggcc
gccaccatcccgccgctgctgcaaggccgcgacgtgctcggccaggcccagaccggcacc
ggcaagaccgccgcgttcgcgctgccgatcctggccaacatcgacccggcccaggcccgg
ccgcaggcgctggtgctggcgcccacgcgcgagctggcgatccaggtcgccgaggcgttc
cagaagtacgccacccacctgcccggcttccacgtgctgccgatctacggcggccagagc
tattacccgcagttgcaggcgctcaagcgcggcgtgcaggtcgtggtcggcacgccgggc
cgcgtcatcgaccatctcgagcgcggctcgctcgacctgtcgcagctgcgctgcctggtg
ctcgacgaagccgacgaaatgctgcgcatgggcttcatcgacgacgtcgagaacgtcctc
aagaagaccccggaatcgcgccaggtggcgctgttctcggcgaccatgccgacccagatc
aagcgcatcgcccagacctatctgaaggatccggtcgagatcgcgatcaagtcgaccacc
accacctcggccaacatccgccagcgctattggtcggtcagcggcgtgcacaagctcgac
gcgctgacccgcatcctggaggccgagaccttcgatgcgatgatcgtgttctcgcgcacc
aagctgggcaccgaggaactggccgagaagctgatggcgcgcggcatttcggccgcggcg
atcaacggcgacgtgcagcagcagcagcgcgagaagaccatccagaatctcaaggacggc
aagatcgacgtgctggtcgccaccgacgtggccgcgcgcggcctggacgtggaccgcatc
agccacgtgctgaactacgacatcccctacgacaccgagagctacgtccaccgcatcggc
cgcaccggccgcgccgggcgcaagggcgaggcgatcttgttcgtgaccccgcgcgagcgc
ggcatgctgcgcgcgatcgagcgcgccacgcgccagccgatcgagccgatggagctgccg
agcgtggagacggtcaacgagcagcgcgtctcgcgcttcctcggccgcatcagcgaggcg
ctggaaagcgacgatctgggcctgttccgcgacctggtcgagcgctacgagcgcgagaag
aacgtgccggcggtagagatcgccgcggcgctggccaagctggtgcagggcgaaaacccg
ctgctgctgacgccgccgccggcggtgcccaagtacgcccgcgaagagcgcgacggcccg
cgcgagcaccgtggccaggccacgcgcaagttcatcgagcgcgacaacgcctccaactcg
ggcgcgcatcgtcgcgacgacaaccgccgcgaagcgccgcgcttcgagccgcggccgccg
cgcgaagatcgcccggcgaaccgccatgaggatcgccagtacaccccgccgggcgcggcg
cgtccgccggtcaaccgcgccgaagcgttcttcgacgacgacgcaccggcgccgcgcgct
ccgcgtagcgaacgcgcgccggcgcgcgagggcgacgtgggcatggagaccttccgcatc
gaagtcggccacagccacggcgtgcagccgggcaacatcgtcggtgccatcgctaacgag
gccgatctggaaagccgctacatcggccgcatcgacatccgcgacgagtacaccctggtc
gacctgcccgagggcatgccgcgcgagttgatggagcacctgaagaaggtgcgcgtggcc
ggccagccgctgcgcatccagcgcgccgggccgggcgacgccgaaggcgggcgcggcggc
cgcggggccggccgtcctccgagcggtccgcgcgggcccaagccgcacggcggcggtccg
cgcaagccgttcaagccgcgcgggccgcgctga
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