Lysobacter enzymogenes M497-1: LEN_2860
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Entry
LEN_2860 CDS
T04598
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lem
Lysobacter enzymogenes M497-1
Pathway
lem03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lem00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LEN_2860 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lem03019
]
LEN_2860 (pnp)
03016 Transfer RNA biogenesis [BR:
lem03016
]
LEN_2860 (pnp)
Enzymes [BR:
lem01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LEN_2860 (pnp)
Messenger RNA biogenesis [BR:
lem03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LEN_2860 (pnp)
Transfer RNA biogenesis [BR:
lem03016
]
Prokaryotic type
tRNA degradation factors
LEN_2860 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
OB_RRP5_4th
KH_2
KH-I_KHDC4-BBP
DUF7680
S1_2
KH_5
S1CSD-TOTE-1
ODR4-like
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
BAV98347
UniProt:
A0AAU9AGE5
LinkDB
All DBs
Position
complement(3612164..3614272)
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AA seq
702 aa
AA seq
DB search
MAKITKTFQYGNHQVTLETGEIARQAGGAVIVKFEDTVLLVTAVAAKSAREGQDFFPLTV
DYQEKFYAGGRIPGGFFKREGRATEKETLISRLIDRPIRPLFPEDYKNEVQIIATVMSLN
PEIDGDIPALIGASAAMALAGTPFQGPIGAAKVGYKNGQYLLNPTATELADSELELVVAG
TSNAVLMVESEAKMLSEDVMLGAVMFGHREMQKVINIINELVVEAGTKPSTWEAPAKNDA
LIGALKEAVGGQLAQAFQVRDKLQRRDAISAIKKDVLQSLAGRAEADGWHTAELSKEFGE
LEYQTMRNSVLDTKIRIDGRALDTVRPIASKVGVLPRTHGSSLFTRGETQAIVVATLGTA
RDGQIIDAVSGEYKEHFLFHYNFPPYSVGECGRMMGPKRREIGHGRLAKRGVLAVMPTME
AFPYTIRIVSEITESNGSSSMASVCGSSLALMDAGVPIKAPVAGIAMGLVKEGDNFVVLS
DILGDEDHLGDMDFKVAGTSEGISALQMDIKIQGITEEIMKVALQQAKAGRLHILGEMAH
AITQSRSELSEFAPRLLTMKIHPDKIREVIGKGGSTIQAITKETGTQIDIQDDGTIVIAS
VNAAAAQAAKARIDQIVSDVEPGRIYEGKVAKIMDFGAFVTILPGKDGLVHVSQISNERV
EKVSDKLKEGDVVKVKVLEVDKQGRIRLSMKAVEEGEGVAAE
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtggcaaaaattaccaagaccttccagtacggcaaccatcaggtgaccctggagaccggc
gaaatcgcccgtcaggccggcggcgcagtgatcgtcaagttcgaagacaccgtactgctg
gtgacggccgtggccgccaagagcgcgcgcgaggggcaggacttcttcccgctcaccgtc
gattaccaggagaagttctacgccggtggccgtatcccgggcggcttcttcaagcgtgag
ggccgcgcgaccgagaaggaaaccctgatctcgcgtctgatcgaccgcccgatccgtccg
ctgttcccggaagactacaagaacgaagtccagatcatcgcgaccgtcatgtcgttgaat
ccggaaatcgacggcgacatcccggcgctgatcggcgcttcggctgcgatggcgctggcc
ggcaccccgttccagggtccgatcggcgctgccaaggtcggctacaagaacggccagtac
ctgctgaacccgaccgcgaccgaactggccgactccgagctcgagctcgtcgtcgccggc
acctcgaacgcggtgctgatggtcgaatccgaagccaagatgctgtccgaggacgtcatg
ctcggcgcggtgatgttcggccatcgcgaaatgcagaaggtcatcaacatcatcaacgag
ctcgtcgtcgaagccggcaccaagccgtcgacgtgggaagctccggccaagaacgacgcg
ctgatcggcgcgctcaaggaagccgtcggcggccagctggcgcaggcgttccaggtgcgc
gacaagctgcagcgccgcgacgccatctcggcgatcaagaaggacgtgctgcagtcgctg
gccggccgcgccgaagccgacggctggcacaccgccgagctgtcgaaggaattcggcgag
ctcgagtaccagaccatgcgcaactcggtgctcgacaccaagatccgcatcgacggccgc
gccctcgacaccgtgcgcccgatcgcttccaaggtcggcgtgctgccgcgcacccacggc
tcttcgctgttcacccgcggcgagacccaggcgatcgtggtcgccaccctcggcaccgcg
cgtgacggccagatcatcgacgccgtgtcgggcgagtacaaagagcacttcctgttccat
tacaacttcccgccctactcggtcggcgagtgcggccgcatgatgggcccgaagcgtcgc
gaaatcggccacggccgcctcgccaagcgcggcgtgctcgcggtgatgccgacgatggaa
gcgttcccgtacaccatccgcatcgtctcggaaatcaccgagtcgaacggttcgtcctcg
atggcttcggtctgcggcagctcgctggcgctgatggacgccggcgtgccgatcaaggcg
ccggtcgccggcatcgcgatgggcctggtcaaggaaggcgacaacttcgtcgtcctgtcg
gacatcctgggcgatgaagatcacctgggcgacatggacttcaaggtcgccggcacctcg
gaaggcatctccgcgctgcagatggacatcaagatccagggcatcaccgaagagatcatg
aaggtcgcgttgcagcaggccaaggccggccgcctgcacatcctgggcgagatggcccac
gccatcacccagtcgcgctcggagctgtccgagttcgcgccgcgcctgctgacgatgaag
atccacccggacaagatccgcgaagtgatcggcaagggcggctcgaccatccaggcgatc
accaaggaaaccggcacccagatcgacatccaggacgacggcaccatcgtcatcgcctcg
gtcaacgccgccgccgcgcaggccgccaaggcgcgcatcgaccagatcgtctccgacgtc
gagccgggccgcatctacgaaggcaaggtcgccaagatcatggacttcggcgcgttcgtc
accatcctgccgggcaaggacggcctggtgcacgtctcgcagatctccaacgagcgcgtc
gagaaggtgtccgacaagctcaaggaaggcgacgtggtcaaggtcaaggtgctggaagtc
gacaagcagggccgcatccgcctgtcgatgaaggccgtggaagaaggcgagggcgtcgcg
gccgagtaa
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