Leptolyngbya sp. NIES-3755: LEP3755_30170
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Entry
LEP3755_30170 CDS
T04199
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
len
Leptolyngbya sp. NIES-3755
Pathway
len03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
len00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LEP3755_30170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
len03019
]
LEP3755_30170
03009 Ribosome biogenesis [BR:
len03009
]
LEP3755_30170
Enzymes [BR:
len01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LEP3755_30170
Messenger RNA biogenesis [BR:
len03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LEP3755_30170
Ribosome biogenesis [BR:
len03009
]
Prokaryotic type
rRNA helicases
LEP3755_30170
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
HEM4
AAA_30
Motif
Other DBs
NCBI-ProteinID:
BAU12488
UniProt:
A0A0S3U4M6
LinkDB
All DBs
Position
complement(3106834..3108270)
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AA seq
478 aa
AA seq
DB search
MTLSFQSLGLSEERIRHLEELGFTAPTAIQAQAIPHLLAGRDVVGQAQTGTGKTAAFGLP
ILERIDLKSPTVQALILTPTRELAMQVCQAIRSFTNDRRVKVVTIYGGQSIDMQVDRLRR
GAQIVVGTPGRVIDLLGRGDLKLDHLDWLVLDEADEMLNMGFIQDVEKILSQAPAERQTT
FFSATMEPSIRKLVNKFLNSPVTVTIEQPKAAPSRINQVAYTIPRGWTKAKAILPILELE
DPEAAIIFVRTRRAAAELTSQLQAAGHSVDEYHGDLSQSQRERLLLRFRQQQIKWVVATD
IAARGIHVDDLTHVINYDLPDSVESYVHRIGRTGRAGKEGTAISLVHPLDRRKLRDIENH
VRQRLEIKSIPTRAEIEARYLDKLQSQVRETLAGERVASFLPIVAQLAEDYEPHTVAAAA
LQMIYDRTRPAWLTIGSDPTPEETSGGRGSGGAKPKPVKRSRPSGSSNHHRRQPAQSK
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgaccctttcttttcaaagcctcggactgtctgaagaacgaattcgccatctggaagaa
ctcggatttactgccccgactgcgattcaagcccaagctattcctcatctacttgctggg
cgcgatgtagtcggtcaagcacaaaccggaaccggaaaaactgcggcgtttggtcttccg
attctggagcgcattgatcttaaatctcccactgttcaagcgttgatcttgactccgact
cgcgagctagcgatgcaagtttgccaagccattcgttcctttacaaacgatcgacgagtc
aaagtcgtgacgatctacggtggacaatcgatcgatatgcaagtcgatcgcttacgtcgc
ggtgctcaaatcgtggtgggaactcccggacgagtgatcgatttactcggtcgtggcgat
cttaaactcgatcatctcgattggctcgtattggatgaagccgatgagatgttaaatatg
ggctttatccaagatgtcgagaagattctgagccaagcacctgctgaacgtcagacgact
ttcttctccgcaacaatggagccatcgattcggaagttggtaaacaagttcttgaattcg
cctgtaacggtgacgatcgagcaaccgaaagccgctccgtctcgaatcaatcaagtcgcg
tatacgattcctcgcggctggacgaaagcgaaagcaattctgccgattctcgaactcgaa
gatccagaagcagcaatcatctttgtgcggactcgtcgcgctgctgctgaattgaccagc
caattgcaagcagctggacacagtgtggatgagtaccacggtgatttgagccagagccaa
cgggagcgtttactgcttcggttccgtcagcaacagatcaaatgggtggttgcgaccgac
attgcagcacgaggcattcacgttgatgatctcactcacgtgattaactacgacttgccg
gatagcgtcgaaagctatgttcaccggattggtcggacaggtcgtgcaggcaaagaagga
accgcgatttcgttggtgcatccgctcgatcgacgtaaattgcgtgatatcgagaaccac
gttcgtcagcgtttagagatcaaatcgattccgactcgtgctgaaattgaagcgcgttat
ctggataaattgcagtctcaagtgcgtgaaacgcttgcaggtgagcgcgtggcatccttc
ttgccgatcgtggctcagttagccgaagactacgaaccgcatacagtcgcggcggctgcc
cttcagatgatttacgatcgtactcgtcccgcttggttgacgatcggatcagatccgact
cctgaagaaaccagtggtggacgcggttcaggtggagcaaaaccgaaacctgtgaagcga
tcgagaccttctggttcctcgaatcatcaccgtcgccagcctgcacaatctaagtag
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