Leptolyngbya sp. NIES-3755: LEP3755_34680
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Entry
LEP3755_34680 CDS
T04199
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
len
Leptolyngbya sp. NIES-3755
Pathway
len03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
len00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LEP3755_34680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
len03019
]
LEP3755_34680
03016 Transfer RNA biogenesis [BR:
len03016
]
LEP3755_34680
Enzymes [BR:
len01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LEP3755_34680
Messenger RNA biogenesis [BR:
len03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LEP3755_34680
Transfer RNA biogenesis [BR:
len03016
]
Prokaryotic type
tRNA degradation factors
LEP3755_34680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
KH_2
KH_KhpA-B
KH_NusA_1st
Motif
Other DBs
NCBI-ProteinID:
BAU12932
LinkDB
All DBs
Position
3562057..3564204
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AA seq
715 aa
AA seq
DB search
MQEFEKSISFDGRDIRLKVGLLAPQAGGSVLIESGDTAVLVTATRAKAREGIDFLPLLVD
YEERLYAAGRIPGGFLKREGRPPEKAILTSRLIDRPLRPLFPSWLRDDIQVVATTMSMDE
RVPPDVLAVTGASIAVLLAKIPFNGPMAAVRVGLVGDDFVINPTYKEIESGDLDLVVAGS
PNGVIMVEAGANQLPEADMIEAIDFGYEAVRDLIQAQREFIEALGIELVQEAAPEIDQTL
ENFIRDRVTTPVKEILARLEKDRTVRDAALDEVKASLVAAIEELPEDDPVKVAAAADAKA
ISNTFKDVNKTLMRRQVVEDNVRVDGRQLDEIRPISCRVGVLPQRVHGSGVFNRGLTQVL
SIATLGSPGDEQEMDDLHPDTEKRYLHHYNFPPFSVGETRPMRSPGRREIGHGALAERAL
VPVLPPKEQFPYVIRVVSEVLSSNGSTSMGSVSGSTLALMHAGVPIIKPVSGAAMGLIKE
GEEIRILTDIQGIEDFLGDMDFKVAGTDTGITALQLDMKITGLPMNVIADAIHRAKPARL
HILGKMLEAIDQPRSELSPFAPRLLTIKIDQDQIGMIIGPGGKTIKGITEETGAKIDIAE
DGTVTISAIEGEKAKRAKAIIQGMTRKLNAGDIYAGKVTRIIPIGAFVEFLPGKEGMIHI
SQLADHRVGKVEDEVTIGDEVVVKVREIDNRGRVNLTRLGIHPDEATAAREAAAK
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgcaagagttcgagaagtcaatatcctttgatggtagggatattcgactcaaagtaggc
ttgttagcaccccaagctggaggttcagttttaatcgagtcgggagatacggcagttcta
gtaactgcgactcgtgcaaaagcgagagaaggcatcgattttctccccttgctggtggat
tatgaggagcgcttatacgcagccggacgcatcccaggcggattcctcaaacgcgaaggt
cgccctcccgaaaaagcaatcctgaccagccgtttgattgaccgtcctttgcgccccttg
ttcccgtcctggttgcgtgacgatatccaagtcgtggcaaccactatgtcaatggatgag
cgtgttccaccggatgtcttagcggtgactggagcttcgatcgcggttctactcgcaaag
attccattcaatggtccgatggcagccgttcgagtgggtttagtcggtgatgattttgtc
attaaccctacttataaagagatcgaatccggtgatttggatctcgtggttgcgggatct
cccaatggcgtgatcatggtcgaagcgggcgcaaatcagcttcccgaagccgacatgatc
gaagcgatcgatttcgggtacgaagcggtacgcgatttgattcaagctcagcgcgaattc
atcgaagcactcggaatcgaactggttcaggaagcagcaccagaaatcgatcaaacgcta
gagaactttattcgcgatcgcgtgacgactccggttaaagaaattttggcgcgacttgaa
aaagacagaactgttcgcgatgccgcacttgatgaagtgaaagcttcactggttgccgcg
atcgaggaattgcctgaagacgatccggtaaaagtggctgcggctgccgatgcaaaagcg
atcagtaacaccttcaaagatgtgaacaaaacgctgatgcgtcgtcaagtcgtcgaggat
aatgtccgcgtcgatggtcggcaactcgatgaaattcgtccgatttcctgtcgggtcggt
gttttaccgcagcgagttcacggaagtggagtctttaatcggggactcactcaagtcttg
tcgatcgcaacgcttggcagtccgggtgacgaacaagaaatggatgatttgcatcccgac
accgaaaaacgctacttgcaccactataatttcccgcccttctcggtgggtgaaactcgc
ccaatgcgatcgcccggtcgtcgggaaattggtcacggtgcattggcagaacgcgctctg
gttccggtgcttccacccaaggagcaattcccgtatgtgatccgggtcgtttcagaagtt
ctctcttctaacggttcgacctcgatgggttcggtttcgggttcgacactggcactgatg
cacgcaggggttccaattatcaaacctgtgagcggtgcagcaatgggcttgatcaaagaa
ggcgaagaaattcgtatcctcaccgatattcaagggatcgaggacttcttgggcgatatg
gatttcaaagtcgcaggaaccgatactggaatcacagcattgcaactcgatatgaaaatt
actgggctgccgatgaatgtgatcgcggacgcgattcaccgggcgaaacctgctcgattg
catattctgggcaagatgctcgaagcgatcgaccaaccgcgctcagaactgtctccgttt
gctcctcgcttgctgaccatcaagatcgatcaagaccaaatcgggatgatcattggtccg
ggtggtaaaacgattaaaggcattaccgaggaaactggagccaagatcgatatcgctgaa
gatggaactgtgacgatttctgcgatcgaaggtgagaaagcgaaacgtgcgaaagcgatt
atccaggggatgacccgtaaattgaatgcgggtgacatctatgcgggtaaagtgacgcga
attatcccgatcggtgcatttgtggaattcttgccgggtaaagaaggcatgattcacatt
tcgcagttagcggatcatcgagtgggtaaagtcgaggatgaagttacgattggcgatgaa
gtggtcgtgaaagtccgcgaaatcgataaccgaggtcgggtgaatttgactcgattgggg
attcatcctgatgaagccaccgcagcacgagaagcggcagcaaaatag
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