Lentzea sp. JNUCC 0626: JNUCC0626_36825
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Entry
JNUCC0626_36825 CDS
T11684
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lent Lentzea sp. JNUCC 0626
Pathway
lent03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lent00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JNUCC0626_36825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lent03021
]
JNUCC0626_36825
03400 DNA repair and recombination proteins [BR:
lent03400
]
JNUCC0626_36825
Enzymes [BR:
lent01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JNUCC0626_36825
Transcription machinery [BR:
lent03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JNUCC0626_36825
DNA repair and recombination proteins [BR:
lent03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JNUCC0626_36825
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Mycobacteriophage_Gp53
Motif
Other DBs
NCBI-ProteinID:
XIJ12156
LinkDB
All DBs
Position
7919626..7923522
Genome browser
AA seq
1298 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSFGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVIVGVNAELRHNDLPTLESEMQVERKRVENRRDADVEARAQKLEAD
LAELEAEGAKSDVRRKVKEGGEREMRQLRDRAQRELDRLDEIWSTFTKLERAQLIADELL
YRELYDRYGDYFTGAMGAEAIQKLLGDYDVDAESEILRETIRSGKGQKKLRALKRLKVVA
AFQATRNNPQGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PAVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARVLMLSSNNILSPASGKPLAMPRLDMVTGLYHLTRHKKDDIGEGH
FYSSPAEALMAFDRKVLGLQAMVKIRVSDKNPPKGQEPEGWEPGQPWLAETTLGRVLFNE
ILPQDYAFINEVMPKKRQAVIINDLAERYPMVTVARTLDKLKDAGFHWATRSGVTVAISD
VLVPAAKQDILEEHERLADAVEKRYQRGQLSHEERNSELVKVWTKATEQVHEIMEDNFPE
DNSIRVIVQSGAAGNMTQVRSLAGMRGLVTNPKGEYIPRPIKNSFREGLSVLEYFIATHG
ARKGLADTALRTADSGYLTRRLVDVSQDVIIREVDCGTTRGVQMTVGEQLGDKVGLHEFA
QTSVYARTVADDITDAQGNLVLNRGDDLGDPALASLVEAGVVRVKVRSVLTCESPVGVCA
SCYGRSMATGQLVDVGEAVGIVAAQSIGEPGTQLTMRTFHQGGVAGDDITTGLPRVQELF
EARVPKGKAPIADVDGRVRIEDGDRFWKITLIPDDGSEEIVFEKLSKRQRLANTATGPLQ
DGDHVSVGQQLLEGTPDPHEVLRVMGPREAQLHLVQEVQKVYRAQGVAIHDKHIEVIVRQ
MLRRVTIIDSGATEFLPGSLVERADFESGNRAVVAEGGEPAAGRPVLMGITKASLATDSW
LSAASFQETTRVLTDAAINGRSDKLIGLKENVIIGKLIPAGTGINRYRNIQVQPTEEARA
AAYAIPSYDDGYYTPDVFGTGTGAAVPLDDYDFGRDYR
NT seq
3897 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgatgagctccgcatcggtctcgcgaccgcggacgacatc
cgccagtggtcttttggcgaggtcaagaagcccgagaccatcaactaccgcacgctcaag
cccgagaaggacggcttgttctgcgagaagatcttcggtcccaccagggactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgtgcgaaggtgcgtcgtgagcgcatgggccacatcgagctcgccgctccg
gtcacgcacatctggtacttcaagggcgttccgagccggttgggctacctgctcgacctg
gcccccaaggacctcgagaagatcatctacttcgccgcctacgtcatcgtgggcgtgaac
gccgagctgcgccacaacgacctgccgacgctcgagagcgagatgcaggtcgagcgcaag
cgcgtcgagaaccgtcgcgacgccgacgtggaggcccgcgcccagaagctcgaggccgac
ctggccgagctcgaggccgagggtgccaagtccgacgtgcgccgcaaggtcaaggagggt
ggcgaacgtgagatgcgccagctccgcgaccgcgcccagcgcgagctggaccgcctcgac
gagatctggtccacgttcaccaagctcgagcgcgctcagctgatcgcggacgagctgctc
taccgcgagctgtacgaccgctacggcgactacttcaccggtgccatgggcgcggaggcc
atccagaagctcctgggtgactacgacgtcgacgccgagtccgagatcctgcgcgagacg
atccgcagcggcaagggccagaagaagctccgtgcgctcaagcgcctcaaggtcgttgcc
gccttccaggcgacccgcaacaacccgcagggcatggtcctggactgcgtcccggtcatc
ccgccggacctgcgcccgatggtgcagctcgacggtggccgtttcgcgacgtccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctcaagcgactgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggaggccgtcgacgcg
ctgttcgacaacggccgccgcggccgcccggtcaccggtcccggtaaccgcccgctgaag
tcgctgtccgacctgctgaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactccggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagcagatggccctggagctcttcaagccgttcgtgatgaagcggctc
gtggacctcaaccacgcgcagaacatcaagtccgccaagcggatggtcgagcgtgcgcgc
ccggccgtgtgggacgtgctggaagaggtcatcaccgagcacccggtgctgctgaaccgc
gcacctacgctgcaccgcctcggcatccaggccttcgagccccagctggtcgagggcaag
gccatccagctgcacccgctggtctgtgaagcgttcaacgccgacttcgacggtgaccag
atggcagtccacctgccgctgtccgccgaggcgcaggccgaggcccgcgtcctgatgctg
tcgtcgaacaacatcctgtccccggcgtccggcaagccgctggccatgccgcgtctggac
atggtgacgggtctgtaccacctgacccgccacaagaaggacgacatcggcgagggccac
ttctactcgtcgccggccgaggcgctcatggcgttcgaccgcaaggtcctgggcctgcag
gcgatggtgaagatccgcgtctccgacaagaacccgcccaagggccaggagcccgaaggc
tgggagcccggtcagccgtggctcgcggagaccacgctgggtcgcgtgctgttcaacgag
atcctgccgcaggactacgccttcatcaacgaggtcatgcccaagaagcggcaggccgtg
atcatcaacgacctggccgagcgctacccgatggtcaccgtcgcccggacgctggacaag
ctgaaggacgccggtttccactgggctacccgctccggtgtcacggtcgcgatctcggac
gtcctcgtcccggcggcgaagcaggacatcctcgaggagcacgagcgcctcgcggacgcc
gtcgagaagcgctaccagcgcggtcagctctcccacgaggagcgcaactccgagctggtc
aaggtgtggacgaaggccaccgagcaggtccacgagatcatggaagacaacttccccgag
gacaactcgatccgcgtcatcgtgcagtccggcgccgccggcaacatgacgcaggtccgt
tcgctcgcgggtatgcgtggtctggtgaccaacccgaagggtgagtacatcccgcgcccg
atcaagaactcgttccgcgagggcttgtcggtgctcgagtacttcatcgcgacgcacggt
gcccgcaagggtctggccgacaccgcgctgcgtaccgccgactcgggttacctgacccgt
cgtctggtggacgtctcgcaggacgtcatcatccgcgaggtcgactgcggcaccacccgt
ggtgtgcagatgaccgtcggcgagcagctgggcgacaaggtcggcctgcacgagttcgcg
cagacgtcggtctacgcccgcacggtcgcggacgacatcacggacgcccagggcaacctg
gtcctgaaccgcggcgacgacctcggcgacccggcgctcgcgtcgctggtcgaggccggc
gtggtccgggtcaaggtccgctccgtgctgacctgtgagtccccggtcggtgtgtgtgcg
tcctgctacggccgctcgatggccaccggccagctggtcgacgtcggcgaggccgtcggc
atcgtcgccgcccagtcgatcggtgagcccggcacgcagctgacgatgcgtacgttccac
cagggtggtgtggccggtgacgacatcacgaccggtctgccccgtgtccaggagctcttc
gaggcccgcgtcccgaagggcaaggcgccgatcgccgacgtcgatggccgcgtgcgcatc
gaggacggcgaccgcttctggaagatcacgctgatcccggacgacggttccgaggagatc
gtgttcgagaagctgtccaagcgtcagcgtctcgccaacacggccaccggcccgctgcag
gacggcgaccacgtgtccgtcggccagcagctgctggaaggtactcctgacccgcacgag
gttctgcgcgtcatgggcccgcgcgaggcgcagctgcacctcgtgcaggaagtccagaag
gtgtaccgcgcccagggtgtggccatccacgacaagcacatcgaggtcatcgtccggcag
atgctccgccgggtcacgatcatcgactcgggtgcgacggagttcctcccgggctcgctg
gtcgagcgcgcggacttcgagtcgggcaaccgcgccgtcgtcgccgaaggtggcgagcca
gcggccggacgtccggtgctgatgggtatcacgaaggcctcgctggcgaccgactcgtgg
ctgtccgccgcgtcgttccaggagaccactcgtgtgctgaccgacgccgccatcaacggg
cgttcggacaagctcatcggtctgaaggagaacgtcatcatcggtaagttgatcccggct
ggtacgggcatcaaccgctaccgcaacatccaggtccagccgaccgaggaagcgcgcgcc
gctgcgtacgcgatcccctcgtacgacgacgggtactacacccccgacgtcttcggcacg
ggcactggcgctgcggtgccgctggacgactacgacttcggtcgcgactaccgctag
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