Leptotrichia sp. oral taxon 212: AMK43_03080
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Entry
AMK43_03080 CDS
T04044
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
leo
Leptotrichia sp. oral taxon 212
Pathway
leo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
leo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMK43_03080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leo03019
]
AMK43_03080
03009 Ribosome biogenesis [BR:
leo03009
]
AMK43_03080
Enzymes [BR:
leo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AMK43_03080
Messenger RNA biogenesis [BR:
leo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AMK43_03080
Ribosome biogenesis [BR:
leo03009
]
Prokaryotic type
rRNA helicases
AMK43_03080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Helicase_RecD
AAA_30
Cas3-like_C_2
Flavi_DEAD
NDK
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ALA95150
UniProt:
A0A0K2J986
LinkDB
All DBs
Position
647744..649519
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AA seq
591 aa
AA seq
DB search
MQKFEDYGLSIEVLDALEKKGFEEPSDIQKLVIPELLKERTHLIGQAQTGTGKTAAFGIP
ILETVDADKTVKALILAPTRELANQVADEIYSLKGKKDIRVLAVYGGASIENQIKKLKSG
VDIVVGTPGRVMDLMRKKVLKVNNLDYFVLDEADEMLNMGFLEDIELILEQTNDEKKMLF
FSATMPKAIMDIAKKFMDDYKLLKVKKQELTTDLTEQIYYEVKQEDKFEALCRVLDYTQN
FYGIVFCRTKSEVDDVTNRLKARNYDAECIHGDITQGLRQKALDLFKKKVLTILVATDVA
ARGIDVSNLTHVINYSIPQEAESYVHRIGRTGRAGHKGIAITFVTPREARTLAQIKRVTK
TEIKRESIPNVSEIIEAKKEALIAYIDEIIKEEDYTSYESFADKLLEERDARHVVSSILR
HFYEDEFLPESYGEIQDVKVKIEDKTRLFIALGSKDGYNPGRLLDLLNKKAKTPGRKVKD
IKIMDKYSFITVPLQEAEFIMRALNSKKDSKPLVEKATGGQSGGSSEGKKRGRKSEKDSK
KKKSGEKEKTSRKSKKSDDKKTSSKSKEKKPKDKSKKSDKSSGKSKKVNKK
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaatttgaagattacggattaagtattgaagtacttgatgcgttggaaaaaaaa
ggatttgaagaaccaagtgatatacagaaattagtgatacctgaattattgaaggagaga
actcatctgatagggcaggcacagaccggaacaggaaaaacagccgcttttggaatacca
atactggaaacagttgatgctgacaagacagtgaaagctctaatattggcacctacaagg
gagctggcaaaccaggttgcagatgaaatatactcattaaaaggaaaaaaggacataaga
gttctggctgtttatggaggagcttccatagaaaatcagataaaaaaacttaaatcagga
gtggacattgtagtgggaactcctggaagagtaatggatctgatgagaaaaaaagtgtta
aaggtaaacaatcttgactattttgtccttgatgaagcagatgaaatgcttaatatggga
tttttagaagatattgagcttatccttgaacagacaaacgatgaaaagaaaatgctgttt
ttctcagcgacgatgcctaaagcaataatggatatagctaaaaagtttatggatgactat
aagcttttaaaagttaaaaaacaggagctgactacagacctgacagaacagatttattat
gaagttaaacaggaagacaagtttgaggcgctatgcagagttcttgactatactcagaac
ttttatggaattgttttctgccgtacaaaatctgaagtagatgatgttacaaacagactt
aaggcaagaaactatgatgctgagtgtattcatggagatataactcagggactgagacag
aaggctcttgaccttttcaagaaaaaagtacttacaatacttgtggcgacagatgttgcg
gcaagaggaatagatgtaagtaatcttacacatgttataaattattcaatacctcaggaa
gcagagtcttatgttcatagaataggaagaactggaagagcgggacataaaggaatagca
ataacatttgtaacgccaagggaagcaagaactctggctcagataaagagagttacaaag
actgaaattaaaagagaatcaatacctaatgtaagtgaaataatagaagcaaaaaaagag
gcgttaattgcatatattgatgaaataataaaagaagaagactacacaagctatgaaagt
tttgcagacaaacttcttgaagaaagagatgcaagacatgttgtttcttctattttaaga
cacttctatgaagatgaatttctacctgaaagttatggagaaatacaggatgttaaagta
aaaattgaagataagacaagactgtttattgcacttggaagtaaagacggatataatccc
ggaagattacttgacctgttaaataaaaaagcaaaaactcctggaagaaaagttaaggat
attaagataatggacaaatattcatttataactgtacctctgcaggaagctgaattcata
atgagagcactgaattccaaaaaggattcaaaaccgctagttgaaaaggcaacaggagga
cagtcaggaggttcttcagaaggtaagaagagaggaagaaaatcagaaaaggattctaaa
aagaaaaaatccggtgaaaaagaaaagacttcaagaaagtctaaaaaatcagatgataaa
aagacttcttcaaaatctaaggaaaaaaagccaaaggataaatcaaaaaagtcagataaa
tcatccggaaaaagcaaaaaagtaaataagaaataa
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