Leptotrichia sp. oral taxon 212: AMK43_03275
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Entry
AMK43_03275 CDS
T04044
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
leo
Leptotrichia sp. oral taxon 212
Pathway
leo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
leo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AMK43_03275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
leo03021
]
AMK43_03275
03400 DNA repair and recombination proteins [BR:
leo03400
]
AMK43_03275
Enzymes [BR:
leo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AMK43_03275
Transcription machinery [BR:
leo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AMK43_03275
DNA repair and recombination proteins [BR:
leo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AMK43_03275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl_2
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ALA95181
UniProt:
A0A0K2JAC3
LinkDB
All DBs
Position
684848..688846
Genome browser
AA seq
1332 aa
AA seq
DB search
MSIRDFDSIQIKLASPEKILEWSYGEITKAETINYRTLKPEMDGLFCEKIFGPSKDYECS
CGKYKRMRYKGMTCEKCGVEVTTSKVRRERMGHIKLATPIAHIWYSKGTPNKMSLLLGIS
TKELESVLYFSRYIVTDPGNTELEKGQILTDREYKLYESQYKKGFTAKMGAEGILKLLEE
IDLNVLESELENEMDTVSSSQKRKKIIKRLKIVRDLILAGNRPEWMILTVLPVIPADLRP
MVQLDGGRFATSDLNDLYRRVINRNIRLQKLMSIKAPEIVIKNEKRMLQEAVDALIDNGR
RGKPVVTQNNRELKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPSLKMNQCGLPKK
MALELYKPFLMRELVKRELASNIKIAKKMVEEEDENVWELIEEIIKNHPVLLNRAPTLHR
LSIQAFEPILIEGKAIRLHPLVCSAFNADFDGDQMAVHLVLSNEAQMEAKLLMLATNNIL
APSSGKPIAVPSQDMVMGCYYMTKERKGEKGEGKIFSNKNQLITAYQSKQVSTHALVKVR
IDGELVETTPGRLIFNTMLPKEVRDYSKTFGKGPLGKLIADLYKKFGFAKTSELIDKIKD
FGFHYGTMAGITVGIEDLEIPETKKAILEKAEADVTEVEQQYKSGEIIDAERYRRTVAIW
SEAVAKVTHEMMDNLDEFNPVYMMANSGARGSIAQMRQLGGMRGLMSDTQGRIIEVPIKA
NFREGLNILEFFMSSHGARKGLADTALRTADSGYLTRRLVDISHEVIVNHDDCGCDGGIV
VSDLVDAGKVIEKLGERIYGRNLAEDLVYNGEVIATRNTLIMEDLIQKIEELEIREVKIR
TPLTCKLEKGVCKKCYGVDLSNHKEILKGEAVGVVAAQSIGEPGTQLTMRTFHTGGVATA
AEVQSDYKAEAAGKVKLKDIKTLENEKGIEVVVSQTGRIIIGKHRYEVPSGSVLKVKDGE
SVKRGQLLVEFDPYQIPIITSEAGKVEFRDIYVRENVDIKYGVTERIAIKPVESSDVNPR
IIIYSKNKKVAEYSVPYGAYLMVKEGDTVKKGQIITKILKTGEGNKDITGGLPRVQELFE
ARNPKGKSTLSEVSGRVVFSDKKRKGMRLITIEDPESGKVIKEYTVPVGEHLVVTNEMLI
EKGAKITDGPVSPHDILKIKGLVAAQQFILESVQQVYREQGVPINDKHIEIIVKQMFQKV
KIKEAGDTLFLEDELIDKKIVERENTKLIEKGKTPATYEPVIQGITKAAVNTESFISASS
FQETTKVLANAAVEGKIDKLEGLKENVIIGKKIPSGTGFKDYKHIKVKLKNEVIENEIPS
EETSEEIIVVEE
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgagtataagagattttgacagtattcaaattaaattggcttcacctgaaaagatactt
gaatggtcttatggtgaaattacaaaggctgaaacaataaactacagaacattgaaacct
gaaatggatggattattctgtgaaaaaatattcgggccatcaaaggattacgaatgttca
tgtggaaaatacaaaagaatgagatacaaaggaatgacctgtgaaaaatgtggagttgaa
gttacaacttccaaagtaagaagagaaagaatgggtcatattaaacttgcaacaccaatc
gcacatatatggtattcaaaaggaactcctaataaaatgagcttattattaggaataagt
actaaggaacttgaatctgtgctgtatttttcaagatatatagtaactgatccaggaaat
actgagcttgaaaaaggacaaattttaacagatagagagtacaagctgtatgaaagtcag
tataaaaaaggattcactgctaaaatgggagcagaaggaatacttaaattactggaagaa
atagacttgaatgttcttgaaagcgaacttgaaaatgaaatggatacagtaagctcttcc
cagaaaagaaaaaagattattaaaagattgaaaatagtaagagatttgatactggctgga
aatagacctgaatggatgattctgacagtactgcctgttattcctgcagacctgagacct
atggttcagctggatggaggaagatttgctacttcagacttaaatgatctttacagaagg
gttataaatagaaatataagattacagaaacttatgtcaataaaagctcctgaaatagta
ataaaaaatgaaaaaagaatgcttcaggaagctgttgatgcattgatagataacggtaga
agaggaaaaccggttgtaactcagaacaacagggaactgaaatcactgtcagacatgctt
aaagggaaacagggaagatttagacagaacctcctgggaaaaagggtcgactattcagga
agatcggttatcgtagttggaccaagcttgaaaatgaaccagtgcggacttcctaaaaaa
atggcacttgagctgtataagccattccttatgagagaacttgtaaagagggaactggct
tcaaatattaagattgcaaagaaaatggtagaagaagaagatgaaaatgtatgggaactg
atagaagaaatcataaaaaatcatccggtactgttaaaccgtgccccaacattacataga
ctttcaatacaggcatttgagccaattctgatagaaggtaaggcaataagattgcatccg
ttagtatgttctgcatttaatgccgattttgatggtgaccagatggcagttcatcttgta
ctttcaaatgaagcacagatggaagctaagcttttaatgcttgcaacgaataatatactt
gccccttcaagtggaaaaccgattgcagtgccttctcaggatatggtcatgggatgttac
tacatgactaaggaaagaaaaggagaaaaaggagaaggaaaaattttctcaaataaaaat
cagttaatcactgcatatcaatctaaacaagtgagtacacatgcacttgtaaaagttaga
attgatggagaattagtagaaacgacacctggaagattgatattcaatactatgcttcct
aaagaggtgagagattattcaaagacttttgggaaagggccgttaggaaaacttattgca
gatctttacaaaaaatttggatttgcaaaaacttcagaactgatagataaaataaaggat
tttggattccattatggaacaatggcaggaattacagtaggaatagaagatctggaaatt
cctgaaactaagaaggctatacttgaaaaggcagaagctgatgttacagaagtcgaacag
cagtataaatcaggagaaataatagatgctgaaagatatagaagaactgttgcaatttgg
tcagaagcagttgctaaagttacgcatgaaatgatggataatcttgacgaatttaacccg
gtttacatgatggcaaattcaggagccagaggatctattgcccagatgagacagcttgga
ggaatgcgtggactgatgtcagatacacagggacgtattatagaagtacctataaaggcg
aacttcagggaaggacttaatatactggaattcttcatgtcatctcacggagcgagaaaa
ggtcttgcagatacggcattaagaacagcggattcaggatatcttactcgtaggcttgta
gatatttctcatgaagttatagtaaatcatgatgattgtggttgcgatggtggaatagta
gtttctgatcttgttgatgcaggaaaagtaatagaaaagcttggagagagaatatatgga
agaaaccttgctgaagatcttgtatataacggagaagtaattgctactagaaatactttg
ataatggaagatttaatacagaaaattgaagaacttgaaataagggaagtaaaaataaga
acacctttaacatgtaagcttgaaaagggagtatgtaagaaatgttatggagtggatctg
tccaatcataaagaaatacttaagggagaagctgttggagttgttgcggcacagtcaata
ggagagcctggtacacagcttacaatgcgtacttttcatacaggaggagttgccactgca
gctgaagtccagtctgactataaggctgaagcagcaggaaaagtaaagcttaaggatata
aaaactcttgaaaatgaaaaaggaatagaagtagtagtttcacagacaggaagaataatc
ataggaaagcacagatatgaagtgccttcagggtcagttcttaaagtaaaggatggagaa
agtgtaaaaagaggtcagcttttagttgaatttgatccttatcagataccgataattact
tctgaagcagggaaagtagaattcagagatatttatgtaagagaaaatgttgatataaaa
tacggagttacagaaagaattgctataaaaccagtagaaagtagcgatgtaaaccctaga
attataatttacagcaaaaataaaaaagttgctgaatatagtgtaccatatggagcatat
ttaatggtgaaagaaggggatacagttaaaaaaggtcagataataacaaaaatcttgaaa
acaggggaaggaaacaaggatattacaggaggtcttccaagagtacaggagctgtttgaa
gcacgtaatccaaaaggaaagtccactctgtcggaagtatcaggacgtgtcgtattctca
gataagaagagaaagggtatgagacttataacaattgaagatcctgaatcaggaaaggtt
atcaaggaatatacagttccggtaggtgaacaccttgtagtaacaaatgaaatgcttatt
gaaaaaggtgcaaaaataactgatggtcctgtatcgccacatgatattttaaaaataaaa
gggcttgtagccgcccagcagtttatattagaatcggtacagcaggtttatagggaacag
ggagttccaataaacgataagcatattgaaataatcgttaaacagatgttccagaaggtt
aagataaaagaagcaggagatacattattccttgaagatgaattaatcgacaagaaaata
gtggaaagagaaaatactaaattgattgaaaaaggaaaaactcctgcaacatatgaacct
gtaatacaaggtataactaaagcggcagtaaatacagaaagctttatttcagcatcatca
ttccaggaaacaacaaaagttcttgcaaatgctgcagttgaaggaaagatagataaactt
gaaggattaaaggaaaatgtaatcataggtaagaaaataccgagtggaacaggatttaaa
gattataagcacataaaagtaaagctgaaaaatgaagtaatagaaaatgaaattccttca
gaagaaacatcagaggaaattatagtagttgaagaataa
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