Leptotrichia sp. oral taxon 212: AMK43_05580
Help
Entry
AMK43_05580 CDS
T04044
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
leo
Leptotrichia sp. oral taxon 212
Pathway
leo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
leo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMK43_05580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leo03019
]
AMK43_05580
03016 Transfer RNA biogenesis [BR:
leo03016
]
AMK43_05580
Enzymes [BR:
leo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AMK43_05580
Messenger RNA biogenesis [BR:
leo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AMK43_05580
Transfer RNA biogenesis [BR:
leo03016
]
Prokaryotic type
tRNA degradation factors
AMK43_05580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH-I_KHDC4-BBP
S1_RRP5
OB_RRP5_4th
DUF6953
DUF1654
SOGA
Motif
Other DBs
NCBI-ProteinID:
ALA95570
LinkDB
All DBs
Position
1175183..1177327
Genome browser
AA seq
714 aa
AA seq
DB search
MFDEKNYGFNLGTQQVKISTGKIARQAGGSVIVQCGGTVLLVTATRSKDVKEGQDFFPLT
VDYIEKFYASGKFPGGFIKRESKPSTEEILISRLVDRPIRPLFPEGFLNAVHIVITVISY
DEVNQPENLATIGVSVALGLSDIPFAGRVAGVTVGYIDGEYILNPTPEQLEVSEIELSVA
GTEDAVTMVEAGAKEVSEDVMLEAIMFGHERIKEICAEQDKFLTQFEVVKYEFEKQETDA
EVKEFIDGFAGELETAIMTPGKLEKYEAIDNLEIELFDKYIAKLEEENREIEEDLEKVFK
KYYRDLEKRTVRDAILYKKYRTDGRTTTEIRPLDVEIDTLPVPHGSALFTRGETQALVVA
TLGSKADEQIVDGMEDESRKKFFLHYNFPPYSVGEAGFMRAPGRRELGHGNLAERALKYV
MPSQDDFPYTVRLVSEITESNGSSSQASICGGSLALMAAGVPIKSTVAGIAMGLIKEGDT
FTVLTDIQGLEDHLGDMDFKVAGTRKGITAIQMDIKIEGITREIMEIALKQALDGRMFII
DKMESVISEPRPEVAENAPKIELMKIDPSKIAGLIGPAGKVIKAIIEETGVSIDIEDDGS
VAIFGKDPEMMKKAIELVKRQTQSVELNAIYEGKVTKLMKFGAFVEVLPGKEGLLHISEI
SEKRVGKVEDVLKEGQIVKVKVITLEDENKFNLSMKALIPKENKGEGGKDESAK
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatgaaaaaaattatgggttcaatttaggaactcagcaggtaaaaataagtaca
ggtaaaatagctagacaggctggaggttcagtaatcgttcaatgtggaggaactgttctg
cttgtaactgcaacaagaagcaaggacgtaaaggaaggacaggatttctttcctttgaca
gtggattatattgaaaagttctatgcatccggaaaatttccgggaggatttataaaaagg
gaatcaaagccttcaacagaggaaattttaatttcaagactggtagatagaccaataaga
ccactatttcctgaaggatttttaaatgctgttcatattgttataacagtaatttcatat
gatgaagttaatcagcctgaaaatcttgcaacaattggagtttctgttgctttaggattg
tctgacattccgtttgcaggaagagtggcaggagtaactgtcgggtatattgatggagaa
tacatcttaaatcctacgcctgaacagcttgaagttagtgaaatagaactgtcagtagca
ggaacagaagatgcggtaactatggttgaagcaggagcaaaggaagtttctgaagatgta
atgcttgaagctataatgtttggacacgaaagaataaaggaaatctgtgcagaacaggat
aaattcctgacacagtttgaagtagtaaaatatgagtttgaaaaacaggaaactgatgct
gaagtaaaagaattcatcgacggttttgcaggtgaacttgaaactgcgataatgacacct
ggtaaacttgaaaaatatgaagcaatagataatcttgaaatagaactgtttgataaatac
attgcaaaacttgaagaagaaaatagggaaatagaagaagatcttgaaaaagtatttaaa
aaatactaccgtgatcttgaaaaaagaacggtaagagatgcgattctttataaaaaatat
aggactgatggaagaacaacaacagaaatcagaccacttgatgtggaaatagatacactt
cctgttcctcatggttctgctctgttcacaagaggagaaactcaggcactggtagttgca
actcttggaagtaaggcggatgaacagatagtggatggaatggaagatgaatcaagaaag
aaattcttcctgcattataactttcctccatattctgttggagaggcaggatttatgaga
gctccgggaagaagggaacttggacatggaaatcttgctgaaagggcattgaaatacgta
atgccttcacaggatgattttccatatactgtaagacttgtttcagagattactgaatca
aatggttcttcatctcaggcaagtatttgtggtggttctctggcacttatggcagcgggg
gtacctataaaatctactgttgcaggaattgcaatgggacttataaaagaaggagataca
tttactgtactgactgatatacagggacttgaagatcatctgggagatatggactttaaa
gtggcaggaacaagaaaaggtataactgctatacagatggatattaaaatagaaggaatc
acaagggaaataatggaaatagcattaaaacaggcactggatggaagaatgtttataata
gacaaaatggaatcagttataagtgaaccaagacctgaagttgctgaaaatgcaccaaaa
attgaactgatgaaaatagacccttctaaaattgcaggactgatagggccggcaggaaaa
gttataaaagctataattgaagaaactggagtttcaatagacatagaagatgatggaagt
gtggctatatttggaaaagatcctgaaatgatgaaaaaagccatagagcttgtaaaaaga
cagacacagtcagtagaactgaatgcgatttatgaaggtaaagtaacaaaacttatgaaa
ttcggtgcatttgtagaagtgcttccaggtaaggaaggactgcttcatatttctgaaata
agtgaaaaaagagtaggaaaagttgaagatgtactgaaagaaggacagattgtaaaagta
aaagtaataacattggaagatgaaaataaatttaatttaagtatgaaagctttaattcct
aaagaaaataaaggagaaggtggtaaggatgaatctgccaaataa
DBGET
integrated database retrieval system
