Leptotrichia sp. oral taxon 212: AMK43_09340
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Entry
AMK43_09340 CDS
T04044
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
leo
Leptotrichia sp. oral taxon 212
Pathway
leo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
leo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMK43_09340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
leo03021
]
AMK43_09340
03019 Messenger RNA biogenesis [BR:
leo03019
]
AMK43_09340
Transcription machinery [BR:
leo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AMK43_09340
Messenger RNA biogenesis [BR:
leo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AMK43_09340
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Rho_N
AAA_25
ANAPC4_WD40
Motif
Other DBs
NCBI-ProteinID:
ALA96724
LinkDB
All DBs
Position
complement(2029443..2030642)
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AA seq
399 aa
AA seq
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MAKEYNIPNFSVMTKYDLVNAVLIEKGKEIGKTYGYGKLDIMGEGSFGFLRNTTIGPDVY
VSISQIKRFFLRNEDIVFGELRVPIGTERNYGILKVLLVNGDLPDKSLERPFFDDLIPSY
PDKKINLGSGELSSRIIDLISPIGKGQRGLIVAPPKAGKTVLLSTLANDIIKYNPEIDVW
ILLIDERPEEVTDIKENVKEAEVYAATFDENPNVHTQVTENVLEMAKREVERGKDILILM
DSLTRLARSYNITIPSSGKLISGGIDPNALYYPKRFLGAARNIKNGGSLTIIATALIETG
SKMDDVIFEEFKGTGNMEIILSRALEQLRIFPAMDVLKSGTRREELLISRDKLEKIWRLR
RELNQMSEVEGVKRLIELIKSYKSNEELLEDLYSKSSSK
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagaatataacataccgaatttttcagtaatgacaaaatatgatcttgtaaat
gcagtgcttattgaaaaaggtaaggaaattgggaaaacttatggttatggaaaacttgac
ataatgggagaaggaagctttggctttcttagaaatacaaccattgggccggatgtatac
gtttcgatatctcagattaagagattttttctcagaaatgaagatatagtatttggggaa
ctgagggttcctataggaacggaaagaaattacggtatattaaaagtcttgcttgtaaat
ggtgatttacctgataagtcactggaacgtccattttttgacgacctgataccttcgtat
cctgataagaagataaatcttggaagcggagaactttcttcaagaataatagatctgatt
tcacctataggaaaagggcagagaggacttattgttgcaccccctaaagcagggaaaaca
gtacttctgtcaactctggcaaatgatataataaagtataatcctgaaattgatgtgtgg
attctgcttatagatgaaagacctgaagaagttactgatataaaggaaaatgtaaaggaa
gcggaagtttatgccgcaacatttgatgaaaatcctaatgttcacactcaggttacagaa
aatgtacttgaaatggcaaaaagggaagtggaacgtggaaaggatatactgattttaatg
gacagtcttacgaggcttgcgagatcctataacattacaattccttcaagcggtaaactg
atttcaggaggaatagatccaaatgccttatattatccaaagagatttttaggagcggca
agaaatataaagaatggtggaagtttgactataattgctacggcacttattgaaacagga
agtaagatggatgatgtaatctttgaggaattcaaagggacaggaaacatggaaattatt
ttaagcagggcattggaacagcttagaatattccctgcaatggatgtactgaagagtgga
acaagaagagaagaactgctgatttccagagataagcttgaaaaaatatggcgtcttaga
agagagctgaatcagatgtcagaagtcgaaggagtgaaaagacttattgaactgataaaa
agttacaaaagtaatgaagaactgcttgaagatttatattctaaaagttcatctaaataa
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