Leptolyngbya sp. PCC 7376: Lepto7376_0859
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Entry
Lepto7376_0859 CDS
T02361
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lep
Leptolyngbya sp. PCC 7376
Pathway
lep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Lepto7376_0859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lep03019
]
Lepto7376_0859
03016 Transfer RNA biogenesis [BR:
lep03016
]
Lepto7376_0859
Enzymes [BR:
lep01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Lepto7376_0859
Messenger RNA biogenesis [BR:
lep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Lepto7376_0859
Transfer RNA biogenesis [BR:
lep03016
]
Prokaryotic type
tRNA degradation factors
Lepto7376_0859
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
AFY37254
LinkDB
All DBs
Position
complement(971848..974145)
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AA seq
765 aa
AA seq
DB search
MDFSVATLLSYFTDDKLVAGKFLEKKLECNSDEDSTNLQIVLDALERAKLLVKERGKYRR
VTDEGIFEAKLRCSSKGFCFAIQDSEDAEDIYIRETYLSNAWNGDRVLVKIIKEGTRRRS
PEGAVKLILERANPSLLAKVVKKEEGFRAVPLDDRLLFELELQDQNELLQEAIDHLVHVS
VLRYPIAQHLPLGAVTKVLGSDAEEAADTDIVCCKHDLLRDFPGDIVAAIAEIAEDLDEA
VIAQRRDFRDQLTITIEEEQHLAPGNEAFVENAFTLSKTETGQWQLGIHIADIAEYVSEG
SALDRWAKKHGTAVFLGETTIPVFPAAFKEKISLLPGGDRLTLSILLTLDEQGIVNEFEI
VPSVIRVDQSLSYQKVQHVLSSGEEVEGELKDVSDLLNNLIFNLSPLVKAQRLQRGGFQI
SLPEVVSAFKDEGRFGTMIVSPSLPVRSLLSEVTILAGRAVAEHMTALELPAIYCYQAQP
DFESLENLIKLGGNLELDLKLESEEELLPHDYQHFIQEFSKVDSAKILNYLLQSTLDSPR
YGKHPHPHFGLAYRDGYTRICSPAQRYGDLVMQRILKLVLSEGRDRRSSRVKNGVNLGSN
SCHEKVNWKVLTATKQGEIEETIAGLILQLNDQEKIADDAEKDLQGLKKAEQMKAHTGDT
FKGLITGVQSYGFFVEIEDLLVEGLVHVSSLKDDWYEYRARHSCLVGRKNRVSYRLGNTV
EVEVKSVDYYRQQIDLAIAKDSGDTNAADQTDEQADVEEEAWEEE
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atggatttctcagtcgctacactgctgtcgtactttacggatgacaaattagttgcaggt
aaattcctcgagaaaaagttagagtgtaattctgatgaggatagtaccaatctccaaatt
gttttggatgctttagagcgcgccaagttgttggtgaaggagcgaggcaagtatcgacgt
gtgactgatgaaggcatctttgaggctaagttgcgatgttcgagtaaaggattttgtttt
gcgatccaggattctgaggatgcggaagatatttatattcgcgaaacctatctgagtaat
gcttggaatggtgaccgggtactggtcaaaattattaaggaaggcacgaggcggcgatcg
cctgagggagcggttaagctgattttagagcgagccaatccttctctcttggcgaaagtg
gtcaaaaaagaggaaggcttccgggcggttcccctcgatgatcgtttgttatttgagtta
gagctacaggatcaaaatgagttgctccaggaggcgattgatcatttggtgcatgtgtcg
gtgctgcgctatccaattgctcaacatttacctttgggtgctgtcacgaaggtgctcggt
agtgatgcagaagaggcggcagacacagatattgtctgctgtaagcatgatctcttacgg
gattttcctggggatattgtggcggcgatcgccgagattgctgaagatttagatgaggcg
gtgattgcccaacgccgggactttcgggatcaattgacgatcacgattgaggaagagcaa
catttagctcctggtaatgaagcctttgtcgaaaatgcctttactctctcgaaaacagag
actggccagtggcagctgggtattcatattgcagatattgcggagtatgtgtctgaaggt
agtgctttagatcgttgggcgaaaaagcatggtaccgcagtatttttgggagagacgacc
attccagtttttcctgcagcgtttaaagaaaaaattagtttgttgccgggtggcgatcgc
ctcactctgtcgattctgttgaccttggatgaacagggaatcgtgaatgaatttgagatt
gtccccagcgtgattcgcgttgaccaaagtctcagttaccaaaaagttcagcatgtgctc
agcagtggtgaggaagttgaaggtgagctaaaagacgtttctgatcttttaaataacctg
atttttaatctcagtccattggttaaagcgcagcgattacaacgaggtggcttccaaatt
tccctgcctgaagtcgtgtctgcctttaaggatgaagggcgttttggcacgatgattgtg
tcgccgagtcttcccgtgcgatcgctgctctccgaagtcactattttggctggacgcgct
gtcgcagaacatatgactgcgttggaattacccgcgatttactgttaccaagcccaaccc
gattttgaaagccttgaaaatctgattaaactcggtggcaatttagagcttgacctgaag
ctcgaatccgaagaagaattactgccccatgattatcagcatttcattcaggaatttagt
aaggttgactccgccaagattctgaactatttactccaatcaaccctcgattcaccacgc
tacggtaaacacccccatcctcactttggcttagcttatcgtgatggctatactcgtatc
tgttcacctgcccagcgttatggcgacttggtgatgcagcgaattctcaaattagttttg
agtgaaggacgcgatcgccgttctagtcgtgttaaaaatggcgtcaatcttggcagtaac
tcctgtcatgaaaaagtaaattggaaggtactgacagccactaaacaaggcgaaatcgaa
gagacgattgccggactgattttgcaactgaatgaccaagaaaagatcgctgatgatgct
gaaaaagatctccaaggtctcaagaaagctgaacagatgaaagctcatactggagatacc
tttaaggggctgattacgggcgtgcaatcctatggcttttttgtggaaatcgaagacctt
ctcgtcgaaggtttagtgcatgtcagctcattgaaggatgactggtatgaatatcgcgct
cgccatagctgtttagtcggccggaaaaatcgagtttcctaccgcctcggtaataccgtt
gaagtggaagttaaaagcgttgactattatcgtcagcaaattgatctggcgatcgccaaa
gattctggagacactaacgctgctgaccaaacggatgagcaggctgatgtagaagaagaa
gcttgggaagaagagtaa
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