Leptolyngbya sp. PCC 7376: Lepto7376_1360
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Entry
Lepto7376_1360 CDS
T02361
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
lep
Leptolyngbya sp. PCC 7376
Pathway
lep03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Lepto7376_1360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lep03400
]
Lepto7376_1360
Enzymes [BR:
lep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Lepto7376_1360
DNA repair and recombination proteins [BR:
lep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Lepto7376_1360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AFY37712
UniProt:
K9PYZ4
LinkDB
All DBs
Position
complement(1529667..1533149)
Genome browser
AA seq
1160 aa
AA seq
DB search
MTFDSVVRYLSRSPLTEEFNQKLIKRQEIQLSGLPRLPKGLVASSIAQVQEKNLLVVCAT
LEEAGRWAAQLEAMGWSQVLFYPTSEASPYEAFDTESEMVWGQMQTLSVMSHQSSPNSKK
LAIVATEKALQPHLPPGDVFADYCLTLQPGEETDGKAIASTLERLGYERTTLVETEGQWT
RRGDIVDIFPVSSELPVRLDFFGDELESIREFDPATQRSLDKLKILKLTPTRFSPLIGQA
IADPTDLNLTDEELEQWGEGNYPEGMQRFLGVAFNEVASLLDYLPEDTLVAVDERDQCLA
HGNKTFETIDAQWKLINGEQTLPKIHRTTEESFELLQDAFHRIILSELDDATDKAINLSS
RPLPITPHQFGKLAEILRGKREIYSTITLDKYNTWLVSAQPSRSVSLLQEHDCAAQFIPN
PKDFPAIKKHQIQGTAIALKYKGQAELEGFILPTYRIAIVTDKEFFGQHTLTSFGYIRKR
RRAASKTVDVNKLRPGDYVVHKSHGVGRFLKMEVLQSREYLAIKYADGLLRIPADSLDTL
SRYRKTAKGRPQLHKLGGKAWEKTKNKVRKSVKKLAVDLLKIYAQRAEMKGTIYPVDAPW
QQEMEDSFPYQATPDQLKAVQDIKRDLESDRPMDRLVCGDVGFGKTEVAIRAIFKVVTSG
HKQVALLAPTTILTQQHYHTLKERFSPYPINIGLLNRFRTASEQKEIMQRLKNGELDIVV
GTQKLLGKEVKFKDLGMLVVDEEQRFGVNQKEKIKAMKTKVDVLTLSATPIPRTLYMSLS
GIREMSLITTPPPSRRPIQTHVSRYQSEAIRTALRNELDRGGQIFYVVPRVEGIEEIAGQ
LREMIPSARVAIAHGQMNESDLEATMLTFSNGEADILLCTTIVESGLDIPRVNTIIVEDS
QKFGLSQLYQLRGRVGRSGIQAHAWLLYPSKGELTEKARKRLRALQEFSQLGSGYQLAMR
DMEIRGVGNLLGAEQSGQMEAIGFDLYMDMLQECISEIRGQEIPQVDDCQVDLKLTAFIP
GNYITDTEQKLDAYRLITNANSKPERMQIASEWTERYGKLPSSVEQLLQVIELKSIAKSL
GFSRIKPEGKQNILLETPMEEPAWKLLEEKLPKHLHSRFVYTPKKVTVRGLGTIKPQQQL
DNLIQWLGMMQGALAEASVV
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgacctttgattcagttgtccgctacctcagccgctcaccacttactgaagagttcaat
caaaagctcattaagcgtcaagaaattcagcttagtggcttaccgcgtttgccaaagggt
ttggtggcatcgagcattgcgcaggtgcaagaaaagaatttattggtcgtttgtgcaacg
ttagaggaggcagggcgttgggcggcgcaattggaggcgatgggctggagtcaagtgctg
ttttatccgacttctgaggcttctccctatgaggcgtttgataccgaatcggagatggtt
tggggacagatgcaaacgttatcggtgatgagtcaccagtcatcaccgaatagtaaaaag
ctggcgattgtggcgacggaaaaggctttgcaaccccatttgccaccgggagatgtattt
gcggattattgtttgacgttgcaacctggggaagaaactgacgggaaggcgatcgcctcc
actctggaaaggttgggatatgagcgcacaacccttgtggagacggagggacaatggaca
aggcgtggtgatattgtcgatattttcccggtgtcgtcggagctgccagtacggttagat
ttctttggggatgagctagaaagcattcgggagtttgacccagcaacccaacgttctctc
gacaagttaaagattttaaagttaacacccactagatttagtccgcttattggtcaggcg
atcgccgatccaacagatttaaatctaactgatgaagaattagaacaatggggtgaaggg
aattatccagaagggatgcaacgatttcttggggtagcgtttaatgaggtggcatcactc
ctagattatttacccgaggatacgctggttgctgtcgatgaacgcgatcaatgtttagcc
catggcaataaaacctttgaaacgattgatgcccagtggaagctgattaatggcgaacag
actctaccgaaaatccaccgaactacggaagaatcttttgagttattgcaggatgcattc
catcggatcattctgtctgaactagacgacgcaacagataaagcgattaatttatccagt
cgtcccctaccgattacaccccatcaattcgggaagttggcagaaattctacggggtaaa
cgggaaatttacagcaccatcaccctcgataagtacaatacttggctcgtttccgcgcaa
ccatcccgttcggtatccttgctccaagaacatgattgcgccgcacagtttatcccaaac
cccaaagattttcctgccatcaaaaaacaccaaatccaaggcacggcgatcgccctgaaa
tataaaggtcaagcggaactcgaagggtttattttgccgacctatcgcattgcgattgtc
actgataaagaattctttggacagcacactctcactagttttggctatatccgcaaacgg
cgacgggcagcatcaaaaactgttgatgttaataagcttcgtccgggtgattacgttgtc
cacaaaagtcatggggtcggtcgtttcctcaagatggaagtgctgcaatcccgtgaatat
ttagccattaaatatgccgatggtttgctgagaattccagcagattctctcgatacctta
tctcgttatcgcaagacagcaaaaggtcgcccccaactccacaaactaggtggtaaagct
tgggagaaaacaaaaaataaagtccgtaaatcggttaaaaaattagccgtcgatctcctc
aaaatttatgctcagcgcgccgaaatgaaaggcaccatttacccagtggatgcaccgtgg
caacaggagatggaagattcttttccttaccaagcgacaccggatcaactcaaggctgta
caggacatcaagcgggatttggagagcgatcgcccgatggatagactcgtctgtggcgat
gtgggtttcggtaaaactgaggtagcaatccgcgctatttttaaagtggtgactagcggt
cataaacaggtagcgttattggctccgacaacaatcctgacccagcagcactaccacaca
ctcaaagaaagattttcgccctatcccatcaacatcggtctgctcaaccgtttccgcacc
gcctccgaacaaaaggaaattatgcagcgacttaaaaatggcgaactcgatatcgttgtc
ggcacacagaagctcttaggaaaagaagtcaaattcaaagatctcggaatgcttgtcgtc
gatgaagagcagcgctttggtgtgaatcaaaaagaaaaaatcaaggcaatgaaaacaaag
gttgatgtcttgacgctctccgccactccgattccgcggacgctttatatgtctctctca
ggcattcgggagatgagcctcatcacgacgccaccaccatcccgtcgccccattcaaacc
catgtttctcgctatcaatcagaggcgattcggacggctctccgcaatgagcttgatcgc
ggtggccaaattttttatgtcgttccccgcgttgaaggtatcgaagagattgctggacaa
ctacgcgaaatgattccctccgcacgggtggcgatcgcccatggccagatgaatgagtct
gatctggaagcaacgatgctcaccttcagcaatggcgaggcggatatcttactttgcacg
actattgtggagtctggcttagatattccccgagtaaacacgattattgtggaagattcc
cagaaatttggcttatctcagctttatcaactcagaggacgggtcgggcgatcaggtatt
caggcacacgcatggctgctctatcccagtaaaggcgaactcacggaaaaagcacggaaa
cgtctgcgagcattacaggaattcagtcagttaggttctggctatcaattggcgatgcgt
gacatggaaatccggggtgtcggtaatctcctcggcgcagaacagtccggccaaatggag
gcgatcggctttgatctttatatggatatgttgcaggaatgtatcagcgaaattcgtggt
caagaaatcccacaggtcgatgattgccaagtcgatctcaaacttactgcattcattccc
ggtaattacattactgataccgagcaaaaactggatgcctatcgtctcatcactaacgcc
aactccaaaccagaacgtatgcaaatcgcatcagaatggacagaacgttacggcaaatta
ccatcttctgttgaacaacttttacaagtaatcgaacttaaaagtattgctaaatctctt
ggtttttctcgcatcaaacctgaaggtaaacaaaatattttattagaaactcccatggaa
gaaccagcctggaaactcctcgaagaaaaactaccgaaacatcttcattcacgttttgtt
tatacgccgaaaaaagtaactgtacgaggtctcggcacaattaaacctcaacaacaactt
gacaacctcattcaatggttaggcatgatgcaaggagctttagctgaagcctcagttgtt
tag
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