Leptolyngbya sp. PCC 7376: Lepto7376_2563
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Entry
Lepto7376_2563 CDS
T02361
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
lep
Leptolyngbya sp. PCC 7376
Brite
KEGG Orthology (KO) [BR:
lep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
lep03016
]
Lepto7376_2563
Enzymes [BR:
lep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Lepto7376_2563
Transfer RNA biogenesis [BR:
lep03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Lepto7376_2563
Prokaryotic type
tRNA splicing ligases
Lepto7376_2563
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AFY38836
LinkDB
All DBs
Position
2867802..2868983
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AA seq
393 aa
AA seq
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MTYQPLPMKTEKPIYSWAGHELASRELQMAKNVASLPFVFKHVSLMPDVHLGKGALVGSV
LATKDAVIPAAVGVDIGCGMAAMQLPFKAEELDGKLKQIRRDIEAAIPVGFNQNKDVDKT
VTNWQGWHSFKDLHKGVKKLEGKALKQMGTLGGGNHFIEVCLDENDNVWLMLHSGSRHIG
NKLAQCHIGTAKELARLSETKLPDPDLAYFVKGTPEFDAYWRDLQWSQNYARFNRDVMME
RFKKIVEKYLAGGKPSKPVLFVNCHHNYAEKETHFDEDVYVTRKGAVRARTNDYGIIPGS
MGAKSFIVKGKGNLMSYCSCSHGAGRLMSRTKAKKQFTVDDLVEQTKGVECRKDHGVIDE
IPGAYKPIEEVMHQQEDLVEVVAVLKQVLCVKG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgacatatcaaccccttccgatgaaaacagaaaagcctatctactcttgggcaggccac
gagttagcctctcgcgagctccagatggcaaaaaatgtcgcctctcttcccttcgtcttc
aagcatgtttccctaatgccagacgttcatttgggtaaaggtgcattagtcggttctgta
ctcgctacgaaagatgctgttattcccgccgctgttggtgtggatattggctgtggcatg
gcagcaatgcagttacctttcaaagcagaggaactcgacggcaaactaaaacaaattcgt
cgcgatatcgaagcggctatccctgtcggctttaaccaaaacaaagatgtcgataaaacc
gtaaccaactggcaaggttggcatagtttcaaagatctccacaagggcgtgaaaaaactg
gaagggaaagccctcaaacaaatgggcaccctcggtggtggcaatcactttattgaggtt
tgtctggacgaaaatgacaacgtttggctaatgctacattctggctctcgtcatatcggc
aataaattagctcaatgtcatatcggcacagccaaagaattagcgcgactctctgaaacg
aaattaccggatcctgatttggcatatttcgtaaaaggaacgccagaatttgatgcctat
tggcgcgatttgcaatggtctcaaaattacgctcgctttaaccgcgacgtaatgatggag
cgctttaaaaagattgtcgaaaaatatcttgctggcggcaaacccagtaaacctgtttta
ttcgtcaactgccaccacaactacgccgagaaagaaactcatttcgacgaagatgtttat
gtcactcgtaaaggtgcagtacgtgctcgaacgaatgattacggcattattcccggttcg
atgggtgcaaagtctttcattgtgaaagggaaaggtaatttgatgagttattgttcctgt
tcccacggtgcgggccgcttaatgtctcgtaccaaggcgaaaaagcagtttaccgtcgat
gatctcgtcgaacaaacgaaaggagtggaatgccgaaaagatcatggcgtcatcgatgaa
atccctggtgcatataagcccattgaggaagtcatgcaccaacaggaagatctcgtcgaa
gttgttgcggttctaaagcaagtactctgcgttaaaggttaa
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