Leptolyngbya sp. IPPAS B-1204: EDM05_019020
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Entry
EDM05_019020 CDS
T10888
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
lepi Leptolyngbya sp. IPPAS B-1204
Pathway
lepi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lepi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EDM05_019020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lepi03019
]
EDM05_019020
03009 Ribosome biogenesis [BR:
lepi03009
]
EDM05_019020
Enzymes [BR:
lepi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EDM05_019020
Messenger RNA biogenesis [BR:
lepi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EDM05_019020
Ribosome biogenesis [BR:
lepi03009
]
Prokaryotic type
rRNA processing factors
EDM05_019020
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
XPM59439
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Position
2120463..2122256
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AA seq
597 aa
AA seq
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MKEPTGNKGPRLTGNISLPGRYLVLMPFGRGVNLSRRIRNDAERNRLRALAILIKPAGMG
LLVRTEAEGMAEEAILEDLETLQKQWESIQQEAMTLRPPSLLNRDDDFIQKVLRDVYSAD
VNRIVVDSHTGLKRVKQHLVNWSGGKSPQGVLIDHHRDRVPILEYFRVNAAIREALKPRV
DLPSGGYIIIERTEALTVIDVNSGSFTRSATARETVLWTNCEAAAEIARQLRLRNIAGVI
IVDFIDMDSRRDQLQVLEQFNKALRVDKARPQIAQLSELGLVELTRKRQGQNIYELFGQT
CPTCSGLGHLVHLPGEIEQAVPEPVEVLRVAPVAEPRIALRETWDRNTDEFDNDGTSDLQ
ELDLTNHPNYQERSRGGDRRRRRTRLKNEPPVKGGLPRVGVELETEEEVGPAEETPAYRV
SPIRPAKEARSEKPERNRGRREKPPAEPPQVISVEMTPEEQDVYALMGISPLVLASEPVK
DPKSTIIAITAPGESPRSDYQLAVAQTGQAAEAALANDAAGDDAAGDFDYDGDPDDLEAE
MAVNDELDTADIAETANGSGFTAPTLANSAPGGFNPAEVGIDPSRRRRRRRSSTSGG
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaaccgaccggcaacaaggggccgcgtttgaccgggaacatcagcctgccaggg
cgttacctagtgctgatgccctttgggcgcggcgtcaacctgtcccgccggatccgcaat
gatgctgaacgcaatcgtctcagagcactcgccattttgatcaaaccggctggaatggga
ctactggtccgtaccgaagcggaaggcatggctgaagaagccatcctagaagacctggaa
accctgcagaaacaatgggaaagtattcagcaagaggcgatgacgctgcgtccgcctagc
ctgttgaatcgcgacgatgattttatccaaaaggttttgcgcgatgtctacagcgctgac
gttaaccggattgtggtagattctcatacgggtttgaagcgcgtcaagcaacacttggtc
aactggagcggcggcaaaagtcctcaaggtgtgttaatcgaccatcaccgtgaccgggtg
ccaattttggagtacttccgcgttaacgctgcaattcgggaagcactcaagcccagggtt
gacttaccctctggtggctatatcatcattgagcgtacggaagccctgaccgtaattgat
gtcaactctggctcctttacgcgctccgcaacagcccgtgaaacggtactgtggactaac
tgtgaggccgcggcagaaattgcccgtcagcttcgtttacgcaacattgcaggcgtgatc
atcgtggacttcatcgacatggattctcgacgtgaccaactgcaagtcctggagcagttc
aacaaagcgctgcgggttgacaaggcgagacctcaaatcgctcagctttctgaattgggc
ttggtcgaattaacgcgcaaacgccagggccaaaatatttatgagctgtttgggcaaacc
tgcccgacctgcagtgggttagggcatttagtgcatttaccgggtgaaattgagcaggcg
gtgcctgaaccggtagaagtgctgcgggtagcccctgttgcagaaccgcgcattgctctg
cgagaaacttgggaccgaaatactgatgagttcgataatgacggtacttctgacttgcag
gagttggatttaaccaatcatcccaactatcaggaacgcagccgaggtggcgatcggcga
cggcgacgcactcgtttgaagaatgaaccgccagttaaaggcggactgccgcgggttgga
gttgagttagaaactgaagaagaggttggtccggctgaggagaccccagcctaccgagtc
agtccgattcgtccggctaaggaagctcgcagtgagaaacctgaacggaatcggggaaga
cgggaaaaaccgcccgccgaaccaccgcaagtgatttcggtggaaatgacaccggaagag
caagatgtctatgctctaatgggtatttctccactggtattagcttcagagcctgtcaag
gatccaaaatcaaccatcattgcgattacggcccccggtgagtctcctcgatctgactat
cagttggctgttgcccaaactggacaagccgctgaagctgctctggccaatgatgccgca
ggtgatgatgctgcaggtgatttcgactacgatggagacccggatgacctagaggcggaa
atggcagtcaatgacgaattggataccgctgatatcgccgaaactgcgaacggttctggg
tttacggcacccacgctagcgaattccgcacccggcggctttaatcctgccgaagttgga
atcgaccccagcagacggcggcggcggcggcggtcttcaacctcaggtgggtga
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