Leptolyngbya sp. IPPAS B-1204: EDM05_027010
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Entry
EDM05_027010 CDS
T10888
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
lepi Leptolyngbya sp. IPPAS B-1204
Pathway
lepi03030
DNA replication
lepi03430
Mismatch repair
lepi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lepi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EDM05_027010
03430 Mismatch repair
EDM05_027010
03440 Homologous recombination
EDM05_027010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lepi03032
]
EDM05_027010
03400 DNA repair and recombination proteins [BR:
lepi03400
]
EDM05_027010
Enzymes [BR:
lepi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
EDM05_027010
DNA replication proteins [BR:
lepi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
EDM05_027010
DNA repair and recombination proteins [BR:
lepi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
EDM05_027010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
XPM60659
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All DBs
Position
3028034..3028816
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AA seq
260 aa
AA seq
DB search
MLSTQLLTYYRNLSQQMFTVVDLETTGRHAWQHRVMEVSVLQATLAEGVLIQQTDLINPL
TQIPLRLAHFTGIKQPMVDAAPPAAEVLPPYLPLLSRGVLTAHNLEFDYPFLQAEFDRLG
IQFVRPETEQLCTVKLARLMLPDLPSRKLPHLVRHFQFDVGRSHRAEADTLACWMLAERL
FTELLNEEDDVLLARFARQVIPLKEAAKLLNCAPEEAKVKLDAAGASTRFVGRKRDGTWV
YRRGEVEQLVLEQVSYTSSQ
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
gtgctatccactcagcttttgacctattaccgcaatctgagccagcagatgtttaccgtt
gttgatctggaaacgacgggccgtcatgcttggcagcatcgagtcatggaagtgtcggtc
ttgcaggcgacgctggcagaaggggtgttaattcagcaaacggatctaatcaatccgctg
acccagattccgctgcggctggctcacttcacgggtatcaagcagccgatggtcgatgcg
gcacctccggcggctgaggtgttgcccccctatctgccgttgctcagtcgcggtgtgttg
accgcccataatctagagtttgactatccgtttttgcaagctgagtttgaccgattgggc
attcaatttgtccggcctgagacagaacaactctgtacggtcaagctggctcggttgatg
ctgccggatctgccttcgcggaaattgccccatttggtcaggcattttcagtttgatgtg
ggtcgctcccaccgggctgaggcggatacgctggcctgctggatgctagctgagcggctg
ttcaccgaactgctgaacgaagaggatgacgtgttgctagcgcggtttgcccgccaggtg
attccgttaaaggaggcggctaagctgctgaattgtgcgccagaggaggccaaagtcaaa
ctagatgcggctggcgcttccacgcggtttgttgggcgcaaacgggacggcacttgggtg
tatcgccggggcgaggtcgagcagttggtgctggaacaggtgagttataccagttctcag
tag
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