Leptolyngbya sp. IPPAS B-1204: EDM05_044450
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Entry
EDM05_044450 CDS
T10888
Name
(GenBank) DNA-directed RNA polymerase subunit gamma
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lepi Leptolyngbya sp. IPPAS B-1204
Pathway
lepi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lepi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
EDM05_044450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lepi03021
]
EDM05_044450
03400 DNA repair and recombination proteins [BR:
lepi03400
]
EDM05_044450
Enzymes [BR:
lepi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
EDM05_044450
Transcription machinery [BR:
lepi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
EDM05_044450
DNA repair and recombination proteins [BR:
lepi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
EDM05_044450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
ANM3_zf-C2H2
Matrix_Paramyxo_N
ACBP4_C
Motif
Other DBs
NCBI-ProteinID:
XQQ05725
LinkDB
All DBs
Position
complement(5095378..5097252)
Genome browser
AA seq
624 aa
AA seq
DB search
MPKLEQRFDYVKIGLASPERIRQWGERTLPNGMVVGEVTKPETINYRTLKPEMDGLFCER
IFGPAKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVAHVWYLKGI
PSYMSILLDMPLRDVEQIVYFNSYVVLDPGNAENLSYKQLLTEDQWIEIEDQLYSEDSQL
QGIEVGIGAEALQRLLQDLDLEKEAETLREEIAVAKGQKRAKLIKRLRVIDNFIATRSQP
DWMILSVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRN
EKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSV
IVVGPKLKIHQCGLPREMAIELFQPFVIHRLIRQGLVNNIKAAKKLIQRNDPQIWDVLEE
VIDGHPVLLNRAPTLHRLGIQAFEPILVEGRAIQIHPLVCPAFNADFDGDQMAVHVPLSL
EAQAEARLLMLASNNILSPATGRPIVTPSQDMVLGCYYLTAENPAATKGAGRYFSSLEDV
IVAYEQGLVDIHAYVWVRFDGAVESEDGEVEPLEAQTADDGSTTKTYKFRRVRQDADGNL
ISQYIKTTPGRIIYNKTVQDALAS
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgccaaagctagaacagcggtttgactacgtcaaaattggtctggcatctccagaacga
attcgccaatggggagagcggacgctgccaaacggcatggttgtgggcgaagtgaccaag
ccggaaacgatcaactaccggacgctaaagccagaaatggatggcttattctgcgagcgg
atttttggtccggccaaggactgggagtgccattgcggtaaatacaaacgagtccggcac
cgggggatcgtctgcgaacgctgcggagtagaagtcaccgagtcgcgcgtgcggcgtcat
cgcatgggctacattaagctggcggcacccgtggctcacgtttggtacttgaagggcatt
cctagctacatgtcgattttgctggatatgccgctgcgggatgtggagcagatcgtgtac
ttcaactcctacgtagtgctggatcccggcaatgcggagaacctcagctacaagcagctc
ctaaccgaagaccagtggatcgagatcgaagaccagctctacagcgaagattcccagctt
caaggaatcgaggtcgggattggggcagaagccttacagcggctgttacaagacctagat
ctggaaaaagaagcggaaactttgcgggaagagatcgcggtagccaaaggtcaaaaacgc
gccaagctgatcaagcgcctgcgggtgatcgacaactttattgccacccgctctcagccc
gactggatgatcctgagcgtgattccggtaattccgcccgacttgcgcccaatggtgcag
ttggatggaggccggtttgccacctcggacttgaacgacttgtaccgccgcgtgattaac
cgcaacaaccgactggcgcgattgcaggaaatcttggctccagaaatcattgtccgcaac
gaaaagcggatgctgcaagaagcggtcgatgctctgatcgataacggtcggcgaggtcgg
acggtggtgggagccaacaaccgcccgctcaagtcgctgtcggacattatcgaaggtaag
cagggccgcttccggcaaaatctgctgggtaagcgggtagactactcgggccgttctgtg
atcgtggttggtcccaagctgaagatccaccagtgcggcttgcccagagaaatggcgatt
gaattgttccagccctttgtgatccaccgcttgattcgtcagggcttggtcaacaacatc
aaggccgctaagaagctgatccagcgcaacgatcctcaaatctgggatgtgctggaagaa
gtgatcgatggccaccccgtgctgttgaaccgggcaccaacgctgcaccgtttagggatt
caagcgttcgagccgattctagtggaaggacgcgccatccaaattcacccgctggtctgt
ccggcctttaacgccgactttgacggcgaccagatggcggtgcatgtgccgttgtcgcta
gaagcgcaggccgaagcacggttgctgatgttggcgtcgaacaatatcctgtctccggcc
accggacgaccgattgtcacgcctagccaggacatggtcttgggctgctactacctgacc
gcagaaaatcctgccgctactaaaggagccggacgctacttctctagcctggaggatgtg
attgtggcctatgagcaggggctagttgacattcacgcctatgtctgggtgcgcttcgat
ggcgcggtggaaagcgaagatggggaagttgagccgctagaagcgcaaaccgccgacgat
ggcagcactacgaaaacctacaaattccgtcgggtgcgtcaagatgcggacggcaatttg
atttcccaatacatcaagaccacgccaggacgaatcatctacaacaagacggttcaagat
gccctggcgagctga
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