Leptolyngbya sp. IPPAS B-1204: EDM05_65560
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Entry
EDM05_65560 CDS
T10888
Name
(GenBank) ribonuclease R family protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
lepi Leptolyngbya sp. IPPAS B-1204
Pathway
lepi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lepi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EDM05_65560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lepi03019
]
EDM05_65560
03016 Transfer RNA biogenesis [BR:
lepi03016
]
EDM05_65560
Enzymes [BR:
lepi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EDM05_65560
Messenger RNA biogenesis [BR:
lepi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EDM05_65560
Transfer RNA biogenesis [BR:
lepi03016
]
Prokaryotic type
tRNA degradation factors
EDM05_65560
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
OB_HELZ2
RNase_II_C_S1
OB_RNR_1st
Rrp44_S1
Motif
Other DBs
NCBI-ProteinID:
XQQ05490
LinkDB
All DBs
Position
4603062..4605470
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AA seq
802 aa
AA seq
DB search
MEFSIAELLANFTDDKLVAPKALEKKLNCKDETSQRLLQIVLDALEKANILVRERGKYRR
IFEDDVVEGKLRCSSKGFCFAIQDVEGSEDIYIRESHLNTAWNGDRVLVKVTKEGTRRRS
PEGEVRLILDRANSSVLARVKQAENGYRATPLDDRLLFEVELKENGVNLEEAVDQLAHVE
ILRYPLGNHPPLGRVAQILGSDAEAASEYDIVCCKHDLPRQFSEAVLEEAKSLPTKLRKA
DLKQRVDLRPLPTITIDGPLNPTGPAIDDALTLEELGADHWRLGIHIADVSYYIEPDSRL
DIEARRRGTSIYLGENVLRMLPERVHQCCSLAAGQDRLAVSVLLTLTSDGQVVEFEIQPT
VIQVDHRLDYQQAQAIVQRHDSPEDSATRPAAYPLPTLDELREFEPVFEMLDQLFILSQA
IRAQRLQRGAFDLNLPEKIFPNEANPELSKFLSTKFQYDDEGALGAMVVSSLLPARSIVT
ELMLLANQIVASHLLALQVPAIYRVHRAPDPSDVQELLKLVSNMGIDAHLEQEDVVHPRD
YQRLVEQFAESKTEKVLTYLLLSTFKPAVYSTTPGQHFGLALDDGYTHFTSPLRRYPDLL
VHRVLHAVFEHGRDRRSTRSKEKVDLRHSSCHGQITWNVLPTDIQTELEEAFAAVVVHLT
EQEKLAQEAEADLEGLKKAEFMQQHTGKIFHGLITGVQSYGFFVEIEELLVEGLVHVSSL
KDDWYEYRSRQQKLVGRKNRKQYKLGDRVEVQVKSVDYYRQQIDLVAVGGGSEAPDEDEP
EEVVLEDELEDANEPEEVEAYD
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggaattttcgattgcagaactactagccaatttcacagacgacaagttagttgctcct
aaggctctggagaagaaactcaactgcaaagatgagaccagccaacgcttgttgcagatt
gttttagatgcactggaaaaagccaatatcctggtgcgggagcggggcaaataccgccgc
atctttgaagacgatgtggtggaaggcaagctgcgctgctcgagcaaagggttttgtttt
gcgatccaggatgtggaaggttcagaagatatctatatccgcgagagccatttgaataca
gcctggaacggggatcgggtgctggtgaaagtcaccaaagaaggcacgcggcgacgcagc
cccgaaggagaagtaaggctgattttagaccgggcaaattcctcggtgttggcccgagtc
aaacaggcagaaaacggctatcgagctacccccctggatgaccggctgctgtttgaagtc
gagctgaaagagaacggtgtcaacttagaagaagcggtagaccagcttgcccatgtggaa
attctacgttacccgctgggcaaccatccacccctgggacgggtggcacagattctaggc
agcgatgctgaggcggcttcggaatacgatattgtttgctgcaagcatgatctgccgcgc
cagttctcagaagcggtgctggaagaagccaaatctctacccacaaagctacgcaaagct
gatctgaagcaacgggttgatctgcgcccactgcccaccattacaatcgatggtccactc
aatcccaccggaccggcaatcgacgatgccctgacgctagaggaactgggagctgatcat
tggcgattgggaattcacattgccgatgtatcctactacattgagccggattccaggcta
gatatcgaagctcgccgacggggcacttcaatctacttgggcgaaaacgtgctgcggatg
ctgcctgagcgagtgcatcaatgctgttccttggcggcgggtcaagatcggctggccgtc
tccgtgctgctgaccctgacctcggatggacaggtggtggaatttgaaatccaacccacg
gtgattcaggtggatcatcggctcgattatcagcaggcgcaagcaattgtacagcggcat
gactccccggaggattctgccactcgccccgcggcctatcccttgccgaccctagacgaa
ctgcgcgagtttgagccggtgtttgagatgctggaccagctcttcatcctcagtcaggcg
attcgcgcccaacggttgcagcggggtgcctttgacctgaacctgccggaaaaaatcttt
cccaatgaagccaacccagagctgagcaagtttctctccactaagttccaatacgacgat
gaaggtgcgctgggcgcaatggtggtgtcttcgctgctgcctgcccgctcaattgtcacc
gaactgatgctgctggccaaccaaattgttgcctctcacctgttggcgctccaggtaccg
gcaatttaccgagtgcaccgagcaccggaccccagcgatgtgcaggaattgctgaagctg
gtgagcaacatgggcatcgacgcccacctggaacaagaagatgtggtgcatccccgcgat
tatcagcgcttggtggaacagtttgctgagtctaaaaccgaaaaggtgctgacctatctg
ctgctgtctacctttaaacccgctgtctacagcacgacccccggtcaacattttggcctg
gcgctggatgatggctatacccacttcacgtcgccgctgaggcgctatccggatctgctg
gtgcatcgcgttctacacgcggtgtttgagcatggccgcgatcgtcgcagcactcggtcc
aaagagaaagtcgatctgcgccacagctcttgccacggccaaattacctggaatgtattg
cctactgatatccaaactgaactcgaagaagcctttgccgctgttgtggtccacctgact
gagcaagagaagctggcccaagaagccgaagccgacctggagggcctgaagaaagccgaa
tttatgcagcagcataccggcaaaatcttccacggtttgattaccggcgtccagtcctac
ggcttctttgtggaaatcgaagagctgttggtggaggggctagtgcatgtcagttcctta
aaagacgactggtacgagtaccgctcgcggcagcagaaactcgtaggccgcaaaaaccgc
aagcagtataagctgggcgaccgggttgaggtgcaagtcaagagcgttgattactatcgt
cagcagattgatctggtggccgtgggtggcggcagcgaggctccagacgaagatgaaccg
gaagaagtggtgctagaagacgagctagaggacgccaacgagccggaagaagtggaggcg
tatgattag
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