Leptolyngbya sp. 7M: JVX88_02050
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Entry
JVX88_02050 CDS
T09998
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
lept
Leptolyngbya sp. 7M
Pathway
lept02020
Two-component system
lept02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
lept00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
JVX88_02050 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JVX88_02050 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lept03021
]
JVX88_02050 (rpoN)
Transcription machinery [BR:
lept03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JVX88_02050 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
LacI
DUF6915
HTH_IclR
HTH_3
KIF9
Motif
Other DBs
NCBI-ProteinID:
QYO65593
LinkDB
All DBs
Position
422263..423819
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AA seq
518 aa
AA seq
DB search
MSSLRLTTQLQQRMVLTPQLRQRIEMLQMTSMELQELIEQEMVANPVLEEVMPGDEVKEI
TDNILDHDAAGEVDQDHQVPDLESRAGVGSDADIFEISLPEGTALNGSDETSLSEEAHEE
SGDSFEEIDFGREFQDYLDPGYKTQEIEYRDDAPSFEQFLSHSVSLSEHLEWQLNLVDLS
AAEISAARNVIGNLDEDGRLSTSVEEIAGLAGCDIETAERGRKTVMSLDPVGCGALDVKE
CILAQLEATGESSSLAAELVRDHLEDLQPHRLQHLAKATGKDLHELNEEIGKIRLLDPYP
GRRFSSDEAIFVAPEVYIEKVDDEYVIYFVDDGSPRLRISPSYHQLLGQDETSKETKDFI
KEKVRSAVDLLRNIEHRRQTIYRVVECIVQRQREFLDKGVEYLKPMMLKDVAEDIGMHLS
TISRVVNRKYAHTPQGVIELRRFFSEGMMNEEGEEVSTRILKLRIKKLVEEEDSKKPLTD
EQIVKILSKEGVKLSRRTVAKYRDQMNIPGSRERKTVI
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcacttagattaacaacccagttacagcaaagaatggtcctgacgccgcagctc
cgtcagcggatcgagatgctgcaaatgacatcgatggaactccaggagctgatcgaacag
gagatggtagccaatccggtcttagaagaggttatgcccggagatgaggtgaaagaaata
acagataacatcctcgatcatgacgctgccggcgaagttgaccaagaccatcaagtccca
gacttagaaagtagagcaggagtcggttcagacgcggatatattcgagatctccttgcct
gaaggaactgccttaaatggctctgacgagacgtctttatctgaggaagcacacgaggag
tcgggcgattcttttgaggagattgatttcggaagggaatttcaggattatttggatccc
ggatacaagactcaggagatcgagtacagggatgatgcacccagcttcgagcagtttctt
tcgcattcagtatcgcttagcgagcatctagagtggcagttgaacttggttgatctttca
gctgcagagatatcagctgcccgcaacgtgatcggcaatctggatgaggatggacgcctc
tcaacgagcgtcgaagaaattgccggtcttgccgggtgtgacatcgagactgccgaaaga
ggtcgtaagacagttatgagtctcgacccggttggatgtggggctctggatgtaaaggaa
tgtatccttgctcaacttgaagcaacgggagagtcaagctctcttgcggctgaattggtt
cgtgatcatctggaagatcttcagccgcatagattgcagcatctagctaaagcaactggc
aaagacctgcacgaacttaacgaagagataggaaagataaggcttttggatccatatccc
gggcgccgcttttcctccgatgaagcgatatttgtagcgcctgaggtctatatagaaaag
gttgacgatgaatacgtcatatattttgtggacgacggaagtccgcgtctcagaataagc
ccttcgtatcatcagttgcttggacaggacgaaacgtcgaaagaaactaaagattttata
aaggagaaggttcgctctgctgttgacctcttacgtaatattgagcatcgcagacaaacg
atatatcgggttgttgaatgtattgtgcagcggcaacgcgaatttcttgataaaggtgtt
gagtacctaaagccgatgatgttgaaagatgttgcggaagatatcgggatgcatctatct
acgatctcgcgagtcgtgaatcggaaatatgctcatacaccccaaggtgtgatcgagctg
agaagattcttcagcgaagggatgatgaacgaagaaggcgaagaggtttcaacgcgaatt
ctgaagttgaggatcaagaaacttgtagaagaagaggattcgaaaaaacctttgaccgac
gaacaaatcgtgaagatactctcaaaagaaggtgtgaagctatcgagaaggacggttgcc
aaatatcgtgaccagatgaatattcccggttcgcgtgaacgaaagaccgtcatttga
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