Leptolyngbya sp. 7M: JVX88_06250
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Entry
JVX88_06250 CDS
T09998
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
lept
Leptolyngbya sp. 7M
Pathway
lept03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
lept00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JVX88_06250 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lept03021
]
JVX88_06250 (rpoC)
03400 DNA repair and recombination proteins [BR:
lept03400
]
JVX88_06250 (rpoC)
Enzymes [BR:
lept01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JVX88_06250 (rpoC)
Transcription machinery [BR:
lept03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JVX88_06250 (rpoC)
DNA repair and recombination proteins [BR:
lept03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JVX88_06250 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
QYO66399
LinkDB
All DBs
Position
complement(1328202..1332509)
Genome browser
AA seq
1435 aa
AA seq
DB search
MFRFNTESKTQLTTNYEAIRISLASPDKIRSWSHGEVTKPETINYRTFKPERDGLFCARI
FGPVSDWECLCGKYKRMKHRGVICDKCGVEVTQSKVRRERLGHIELASPCSHVWFFKGLP
SRIGHLLDITLRDLEKILYFETYIVIDPGDVTDLKEKDLLTDERYRELSREYPNQFVAKM
GAEAIKELLMKIDINELVDDLRQKMRDETSQQKKLKFSKRLKVANSFARSGNNPEWMILD
VLPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKKLIELRAPEVIVRNEKRMLQ
EAVDALFDNGRRGRVLRGANNRPLKSLSGTLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE
LKLHQCGLPKKMALELFKPFIYHKLEKEQHAATIKQAREMVERQEDIVWEILDSVIQEHP
VLLNRAPTLHRLGIQAFEPVLVEGKAIKIHPLVCTAFNADFDGDQMAVHIPLSPEAQIEA
SVLMLASKNLRSPASGQPITVPSQDIVLGCYYLTLARDEMKGEGKAFNSIEDVLLALDAE
VIETQSKIKLRWRGDLIDLTVEHNQQDVIRATVRENIDQVIETTAGRVILNERLTRDGLP
FVNGTLKKKGLQSLVSFSQLRLGDDATVALLDDLKAMGFLYATKSGMSIGIDDMVTPASK
RDIIEEARKEVDKLQKQYEEATMTNMERENKVTAIWSEVTDRVAGAMFDAMKKREKERKE
LNPILVMADSGARGSDAQIRQLAGMRGLMAKPSGEIIETPIVANFREGLNVLQYFISTHG
ARKGLADTALKTADSGYLTRRLVDVAQDVIVSEEDCGTLKGVWAEAIIRNGEEVESLRDR
IVGCTSLDDIVDPVDGTTIVEANKEIDEDLAGAVQLSGLQKVRIRSPLTCESRRGICVKC
YGRNLATGETVEIGEAVGVIAAQSIGEPGTQLTMRTFHVGGTARLEQETKHTAAMDGTVK
FIGDWNIIKNRKKEMISMRRQPSELGLLDDRGREVARYKIVYGAQLHVKDGQKVKEDDVL
ATWDPFTFAILTESTGTVKFQDLKEGRTVEQEIDKVTGQIRLVVKDSDEKNQPRLEIKSG
NKTLKTYQMPIRANLQVTDGQEVEAGDIIAKIPRETTKTKDIVGGLPRVVELFEARKPSE
TAVMSEIDGTVTIGTISKGKRKVIITGEDGAEREYDIPRGTHINVQDGDHVKAGDPLMDG
PLNPHDILRVLGTEALQTYLVSEIQEVYRLQGVNINDKHIEVIVRQMLRWVKIKEVGDTD
FLMEEQVDRFRYEAENRRVAEEGGKTAVGEPLLLGITKASLSTDSFISAASFQETTRVLT
EAAISGRVDYLRGLKENVIMGRLIPAGTGMKYYRNVKVDRDPTENRKVEDEFDELANIRG
GLDLPNFGQIPGVEDPDMASGMDDEEISEDSLDLEGTEEFDIDEAMKIELDDDEL
NT seq
4308 nt
NT seq
+upstream
nt +downstream
nt
atgtttcgattcaatactgaaagcaaaacacaattgaccacgaactatgaggcgatccgc
atttcgcttgcgtcgccggataagatccgctcgtggtcccatggcgaggtcacgaagccg
gaaaccatcaactatcgaacgttcaagccggaacgcgatgggctcttctgtgcgcggata
ttcggcccggtctcagactgggaatgcctctgcggaaaatacaagcggatgaagcaccga
ggagtaatctgcgacaaatgcggtgttgaagtaacgcaaagtaaggtccgccgcgaaagg
cttgggcatatcgagcttgctagtccgtgttcgcacgtctggtttttcaaaggcttgccg
tcacggatcgggcatttgcttgatatcacactgcgggacttggaaaagatactttatttc
gaaacgtacatcgttatcgatcccggcgacgttactgacctgaaggaaaaggacctgctg
accgatgaacggtatcgcgaactttcgcgtgagtatccaaaccagttcgttgccaagatg
ggggccgaggctatcaaagagcttctgatgaagatcgatatcaacgaattggtggacgat
cttagacagaagatgcgcgatgaaacgtcgcagcagaagaagctgaagttttcaaaacgg
ctcaaggtggctaattcgtttgcacgctccggcaacaaccctgagtggatgatccttgac
gtgttgccggtaatcccgccggaactgcgtccgctggtgccgctcgatggcggacgtttt
gccacttccgatctaaacgatctttatcgccgcgtgatcaaccgaaacaaccggttgaaa
aagctcatagagcttcgcgcccctgaggtcatcgttcgcaatgaaaaacgaatgcttcag
gaagcggtagatgcgctttttgacaatggccgacgcggccgcgttctccgcggtgcgaat
aaccgtccgctgaaatcgctttccggaacattgaagggtaaacagggccgattccgacag
aacttgcttggaaagcgtgtggattattcgggtcgttcggtgatcgttgttggccccgag
cttaagctgcatcagtgcggtcttccgaagaagatggctctcgaactttttaagccgttc
atttatcacaaacttgaaaaggaacagcacgcggcaactatcaaacaggctcgcgagatg
gtcgaacgccaggaagacatcgtttgggaaatcctcgacagcgttatccaagaacatccg
gtccttttgaatcgagcaccgacgcttcaccgtcttggtattcaggctttcgagccggtt
ttggtggaaggtaaggccatcaagatacatccgcttgtttgtacggctttcaatgccgac
ttcgacggcgatcaaatggcggtacatattccgctctctcctgaagcacagatcgaggca
agtgttcttatgcttgcatcgaagaatctgcgatcgcctgcgagcggacagcctatcacc
gtgccctcacaggatatcgtcctgggctgctattacctcacgcttgcgcgcgacgagatg
aaaggcgagggcaaggcgttcaattcgatcgaggatgttctgctcgctctcgatgcggaa
gtgatcgagacgcagtccaagatcaaactacgctggcgcggagacctcatcgatcttacg
gtcgaacacaatcagcaggatgttatccgtgcgaccgtccgcgagaacatcgatcaggtg
atcgaaacgaccgcaggccgtgtgatcctcaatgaacggctgacccgcgatggccttcca
ttcgttaacggaacccttaagaaaaagggacttcagtcgcttgtcagctttagtcagctt
cgactcggcgatgatgcgacggttgctcttcttgacgacctgaaggcgatgggcttcctt
tatgcaacgaaatcgggaatgtcgatcggtattgacgacatggttaccccggcatcgaag
cgggacatcattgaagaagcgcgtaaagaggtcgataagcttcagaaacaatacgaagaa
gctacgatgaccaatatggaacgcgagaacaaagttacggctatctggtctgaggttacg
gaccgcgtcgccggagcgatgttcgatgcgatgaagaagcgggaaaaggaacgaaaggaa
ttgaacccgatccttgtaatggctgattcaggcgcaagaggctctgacgctcagatccgc
cagcttgccggtatgcgcggccttatggccaaaccctccggcgagatcatcgaaacgccg
atcgtcgcgaatttccgcgaaggtctgaacgtgctgcagtacttcatctctacgcacgga
gcccgaaagggtctggccgatacggcgctcaaaacggctgactcaggatacctgacgcgg
cgacttgttgacgttgcacaagacgttatcgtttctgaagaagactgcggaacgctcaaa
ggtgtttgggctgaggcgatcatccgaaatggtgaggaggttgaatcgctccgcgaccgg
atagttggctgcacttcactggacgatatcgtcgatccggttgatggaacgaccattgtt
gaggcgaataaagagatagatgaagatcttgccggggccgtgcagctttccggtcttcag
aaagtgcggattcgttcaccgcttacgtgtgaatcacggcgcggcatctgcgtgaaatgc
tacggccgaaatctggcaacgggcgaaactgtagagatcggcgaagctgtcggcgttatc
gcggcgcaatccatcggcgaacccggaacgcagctgacaatgcgtaccttccacgtcggc
ggtaccgctcggctcgaacaagagaccaagcatactgcggcgatggatggaacggtcaag
ttcattggcgattggaatataatcaagaaccgcaagaaagaaatgatctcgatgcggcgg
cagccgtccgagctaggtcttcttgatgaccgcggacgtgaggtcgctcgttacaagata
gtttacggtgcacagctacacgtaaaggacggacaaaaggtcaaggaggatgacgtgctg
gcgacgtgggatccgtttacatttgcgatccttacagaatcgaccgggaccgtgaagttc
caggatctcaaggaaggcaggaccgtcgaacaggaaatcgataaagtaaccggccagatc
cgtcttgtggtcaaagactctgacgaaaagaatcagcctcggcttgagataaagagcgga
aataagacgctgaagacctatcagatgcctattcgggcaaacctgcaggttaccgacggt
caagaggtcgaagccggtgatatcatcgcaaagatcccgcgcgagaccacaaagacgaag
gatatcgtcggaggtcttccgcgtgttgttgagcttttcgaagcgcggaaaccgagcgaa
actgccgttatgtctgagatagacggtaccgttaccatcggaaccatttcaaagggcaaa
cggaaagtgattatcaccggcgaggatggtgcggaacgcgaatacgatataccgcgcgga
acgcacatcaacgttcaggatggcgatcatgtaaaggccggcgatccgttgatggacggt
ccgctcaacccgcatgacatcctgcgcgtcctgggaacagaggccttacagacctatctc
gttagcgagatccaggaggtctatcggctccagggtgtgaacatcaatgataagcacatt
gaagttatcgtccgccagatgcttcgctgggtgaagataaaagaggttggcgatacagat
ttccttatggaagaacaggtcgatcggttcaggtacgaggcagagaaccgccgcgtcgca
gaagaaggcggtaagacggctgttggtgaaccgctccttcttggtataaccaaggcatcg
ctttcgaccgattcatttatttccgctgccagcttccaggaaacgacccgcgtgcttacg
gaagcggcgatctccgggcgcgtggattatctccgcgggctgaaggagaacgtgataatg
ggtcgtctgatccccgccggtactggtatgaaatactatcggaacgttaaggttgatcgt
gacccgacggaaaatcgcaaggttgaagatgaatttgacgagcttgcgaatatccgcggc
gggcttgacttaccgaatttcggacaaattccgggcgttgaggatcctgacatggcaagc
ggtatggatgacgaagagatcagtgaggattcactcgatcttgaaggaaccgaggagttc
gacatcgatgaggcaatgaagatcgagctcgatgacgatgaactctag
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