Leptotrichia sp. oral taxon 498: BCB68_03150
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Entry
BCB68_03150 CDS
T04995
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
leq
Leptotrichia sp. oral taxon 498
Pathway
leq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
leq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BCB68_03150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
leq03400
]
BCB68_03150
Enzymes [BR:
leq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BCB68_03150
DNA repair and recombination proteins [BR:
leq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BCB68_03150
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_30
RecG_dom3_C
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ASQ48048
UniProt:
A0A222P865
LinkDB
All DBs
Position
complement(670796..673912)
Genome browser
AA seq
1038 aa
AA seq
DB search
MEFFNFLKQMDKSFFAKLNEKDKVYRGEIPWILQRSKAKKIIYISTSNKNLENYYSMLDN
YYNEKNTFSKSSDKDTKYIDIFENISQTKEDIVGINVKMLDILRNQDKFILFMNLQISLD
IFFEKVNFLEFKIGSEYKFEKIKKFFLENGYESSYLVEKKGQFSQRGDIVDIFPPDLENP
VRLEFFGDELESIRFFEVDSQISIEKIKEIKIFGNVLSGSEYELVEIISEINNDEVLIAI
ENKELIDYKMEEYILLNRKKENLYRKRYENLKKKSFFISTKNFSKEQLETFKDKEKLEKL
ANQNKIFIQTKNYEKKLSEYNHILKKNQNNFFVSNFELFEGFFSEKNKSFVLTDRELDGY
IYENSRKIKKSIKYKKLNQILVDDYVIHIQYGVGIYKGIQTIDDKDYLKVKYADEDILYI
PVEKLDRLEKYISNDLEPKLFRLGTSGFKRKRKKLEEDIQKFAAELIKIQARRKRQTGFI
YQKDTVWQEEFEESFPFEVTPDQKKAIDDVKNDMESPKIMDRLVCGDVGYGKTEVAMRSA
FKAIDNGKQVILVAPTTILAQQHFERFKKRFENYPIIIENLSRLTKSKSDEILKNLKNGT
VDLVIGTHRLLSDDVVFNNLGLLIIDEEQKFGVKAKEKLKEKKDKLDVLTLTATPIPRTL
NLSLLGIRDISIIDTPPVNRLPIITEILEWDENKVKMAILKELSRDGQVFYIYNDVKNMK
NKVQELKEIIPDFVKIEFIHGQLPPQEIKDKLIRFENGDFDILVASTIIENGIDIPNVNT
ILIENFTGLGLAQVYQLKGRVGRSNRQGYCYLLKTRNTTKLGKQKEDSLFKVEGIKSGGF
QISVEDLKIRGAGEILGDKQHGTIETFGYDLYIKMLNEEIQRQKGEFSEKVENVEIILFD
QGFIPENYIQNEEKLNIYRRFATLSSNEELKDLVFEIKDRFGKIPESLKKFIMSIKFKLF
AQKNKIKRTLEVKDGYRLYFVENCEKEIKNLAEKIKIKKVESLEILGENKKNVNEENFVV
IEVLKKEFLEVVKRGEKL
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atggaattttttaattttttaaaacagatggataaaagtttttttgcaaaattaaatgag
aaagataaagtgtatcgaggggaaattccgtggattttgcagcgatcgaaagctaaaaaa
ataatttatatttcaacttccaataaaaatttagaaaattattattcaatgctggataat
tattataatgagaaaaatactttttctaaaagttcagataaagatacaaaatatattgat
atttttgaaaatatttcgcaaactaaagaagatattgtcggaatcaatgtaaaaatgctg
gatattttaagaaatcaagataaatttattttatttatgaatttacaaatttcactcgat
attttttttgaaaaagtaaattttttggaatttaaaattggaagcgaatataaatttgaa
aaaataaaaaaattttttttggaaaatggatacgaaagttcttatttagttgaaaagaag
gggcagtttagccagcgtggggacattgttgatatttttccaccagatttggaaaatcct
gttagacttgagttttttggcgatgaattagaaagcattagattttttgaagttgacagc
cagatttcgattgaaaaaattaaggagataaaaatttttggaaatgttttgagtggaagc
gaatatgagctagtcgaaataatttcggaaataaataatgacgaagttttaattgctatc
gaaaataaagaattaattgactataaaatggaagaatatattttgttaaatcgaaaaaaa
gagaatttgtatcgaaagagatatgaaaatttgaagaaaaaaagtttttttatttccaca
aaaaattttagtaaagaacagctggaaacttttaaagataaagagaagctggaaaaattg
gcaaatcaaaataaaatttttattcaaacaaaaaattacgaaaaaaaactttccgaatac
aatcacattttgaaaaaaaatcaaaataatttttttgtttcaaattttgagttatttgaa
ggattttttagtgaaaaaaataaaagttttgttttgacggacagggagcttgatggctat
atctatgaaaattccagaaaaataaaaaaatctataaaatataaaaagctaaatcaaatt
ctagtagacgactatgtaattcacatccagtatggagttggaatctacaaaggaattcag
actattgatgacaaggactatttaaaagtaaaatatgccgatgaagatattttatacatt
cctgttgaaaagctggacaggcttgaaaaatatatttctaatgatttggagcccaaatta
tttcgtctgggaacttctggattcaaaagaaaacgaaaaaaattggaagaggacattcaa
aaatttgcagctgaacttataaaaattcaagctagaagaaaaagacaaactggatttatt
tatcaaaaagatacggtttggcaagaggaatttgaagaaagttttccatttgaggttaca
cctgatcagaaaaaggcgattgacgatgtaaaaaatgatatggaaagtccaaaaattatg
gataggctcgtctgcggcgatgtcggttacggcaaaactgaagttgctatgcgttcggca
tttaaagcgattgacaatggaaagcaagtaattttggtagctcctactacaattttggct
cagcagcactttgaaaggtttaaaaagcgatttgaaaattatccgattatcatagaaaat
ttgtcaagacttacaaaaagtaaatcagatgaaattttaaaaaatttaaaaaatggaact
gtggacctggttattggaactcacaggcttttgagcgatgacgttgtctttaataatttg
ggacttttaatcattgacgaagagcagaagtttggagtaaaagcgaaagaaaaattaaaa
gagaaaaaggacaaactggatgttttgacattgactgcaactccaattccaagaacgcta
aatttgtcgctattgggaatacgggatatttcaatcattgacacgccgccagttaatagg
cttccaataataacggaaattttggaatgggacgaaaataaagtaaaaatggcaatttta
aaagaattgtctcgagatggtcaagttttttatatctataacgatgtaaaaaacatgaaa
aataaagtgcaggaactaaaagaaatcattccagattttgtaaaaatagaatttattcac
ggacagcttccgccacaggaaattaaagataaacttattcgctttgaaaatggagatttt
gatattttggtagcttccacgattattgaaaatggaattgacattccgaacgtaaacaca
attttaatagaaaattttacaggacttggattggctcaagtttatcagctaaagggtcgt
gtaggacgaagtaatagacagggctactgctatttgttaaagacaagaaacacaacaaaa
ttgggaaaacaaaaagaagatagcctctttaaagtggaaggaataaagtctggcggtttt
caaatttctgtcgaagatttaaaaattcgtggcgctggagaaattttgggggacaagcag
catggaacaattgaaacttttggctacgatttgtacataaagatgttaaatgaagaaatt
cagcgtcaaaaaggggaatttagcgaaaaagttgaaaacgtggaaattattttatttgat
caaggatttattccagaaaattatattcagaatgaagaaaagctaaatatttatcgccgt
tttgccacgctttcatcaaatgaggagctaaaagatttagtttttgaaataaaagacaga
tttggaaaaattccagaaagtttgaaaaagtttattatgagtataaaatttaagttattt
gctcaaaaaaataaaataaagaggactttggaagtaaaagatggctatagattgtatttt
gtggaaaattgtgaaaaagaaataaaaaatttggctgaaaaaataaaaataaaaaaagtg
gaaagtttggaaattttgggggaaaataaaaaaaatgtaaacgaagaaaattttgttgta
attgaagttttgaaaaaagaatttttggaagttgtcaaaaggggagaaaagttgtga
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