Leptotrichia sp. oral taxon 498: BCB68_10060
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Entry
BCB68_10060 CDS
T04995
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
leq
Leptotrichia sp. oral taxon 498
Pathway
leq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
leq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BCB68_10060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
leq03019
]
BCB68_10060
03009 Ribosome biogenesis [BR:
leq03009
]
BCB68_10060
Enzymes [BR:
leq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BCB68_10060
Messenger RNA biogenesis [BR:
leq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BCB68_10060
Ribosome biogenesis [BR:
leq03009
]
Prokaryotic type
rRNA helicases
BCB68_10060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Helicase_RecD
AAA_30
Cas3-like_C_2
Flavi_DEAD
NadN_nucleosid_C
Motif
Other DBs
NCBI-ProteinID:
ASQ49231
UniProt:
A0A222PBL5
LinkDB
All DBs
Position
complement(2074260..2075945)
Genome browser
AA seq
561 aa
AA seq
DB search
MQKFEDFGLSTEMLNALSKKGFEEPSEIQKLVLPELLKERTHLIGQAQTGTGKTAAFGIP
ILETIKSDKTVKALILAPTRELANQVADEIYSLKGEKDLKVLAVYGGASIENQIRRLKSG
VDIVVGTPGRVIDLMNKKVLKVNNLDYFVLDEADEMLNMGFVEDIEEILKKTNDEKKMLF
FSATIPKPILAIAKKFMPEYKLLKVAKKELTTNLTEQIYYEVKQEDKFEALCRVLDYEQD
FYGIVFCRTKSEVDDVTNKLKARNYDAECIHGDITQALRQKALDLFKKKVLTILVATDVA
ARGIDVSNLTHVINYSIPQEAESYVHRIGRTGRAGQKGIAITFVTPREASKLAQIKRITK
TDIKREDIPNVEEILNAKKEALIAYVEEIIKEDDHSAYDELANNLLQGRDPKQVLASVLR
HVYEDEFLPENYSEIQDVKVKIADKTRLFIALGSKDGYNVGRLLDLLHKKAKTPGRKVKD
VKIMDKYSFITVPLQEAEYIMRALNSKKDSKPLVEEATGGRKSGGNEKKSSKKSGRKKSS
SKKSSSKKDKKDKKSKKKSKK
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaatttgaagattttggattaagtacagaaatgcttaatgcactaagtaaaaaa
ggattcgaggagccaagtgaaatacagaaattggtacttcccgaattattaaaggaaaga
acgcacttaataggacaagcacagacagggacaggaaaaacagcggcatttggcattcca
atcctagaaactattaaatctgataaaactgttaaagcgttaattttggcacctacaaga
gaacttgcaaatcaagtggcagatgaaatttattcgttaaaaggtgaaaaggatttaaaa
gtattggcagtttatggtggcgcatctatcgaaaatcaaattagaaggttaaagtcagga
gttgacattgttgttggaacacctggaagagttatagacttgatgaataaaaaagtctta
aaagttaataatttagattatttcgtattagacgaagcagatgaaatgttaaatatggga
tttgttgaagatattgaagaaatacttaaaaagacaaacgacgagaaaaaaatgttattt
ttctcagcaacgattcctaaaccaattttggcgatagctaaaaaatttatgccagaatat
aaattattaaaagttgcaaaaaaagaattgactacaaatttgacggaacaaatttattat
gaagttaagcaagaggataaatttgaagcgctatgcagagttttggactatgaacaggat
ttttatggaattgtgttttgtagaacaaaatcggaagttgacgatgttacaaataaactg
aaagctagaaattatgatgctgaatgcattcacggggacatcactcaagcattaagacaa
aaagcgctagatttattcaagaaaaaagtgttgacgattcttgtggcgacagatgttgcg
gcaaggggaatagatgtaagcaatttaacacatgtaattaattattcaattccacaagaa
gctgaatcttacgttcacagaattggaagaactggaagagctggacaaaaagggattgca
attacatttgttacacctagggaagctagtaaattagctcagataaaaagaattacaaaa
actgacatcaaaagagaagacataccaaatgtggaagaaattttaaatgctaaaaaagaa
gcattaatcgcttatgttgaagaaattataaaagaagacgaccacagcgcttacgatgaa
ttggcaaataatttactccaaggaagagatccaaaacaagtgttggcatctgtgttaaga
catgtctatgaagatgagtttctacctgaaaattacagtgaaattcaagatgtgaaagtt
aaaattgcggataaaacaagattatttatcgcacttggctcaaaagatggttataatgtg
ggaaggctattagatttacttcataaaaaggcaaaaactccaggaagaaaagtaaaagat
gtaaaaattatggataaatattcgtttataacagtgccattgcaagaagcggaatatatt
atgagagcactaaattctaaaaaagattctaaacctttggttgaagaagctacaggcgga
agaaaaagcggagggaatgagaaaaaatcttctaaaaaatctggaagaaaaaaatcatca
agtaaaaaaagttcttcaaaaaaagacaaaaaagataaaaaatctaagaaaaagtctaaa
aaataa
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